LOC110504527 (LOC106612241)



Basic Information


Item Value
gene id LOC110504527
gene name LOC106612241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 9106690 ~ 9145483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036969785.1
GTTTCGCGTACGCAGGTTCACGAGCTCCTTACCGACCCCAACAGCAGCTGGGGCAGCCAACCACTTTGTTGAACGGGAACTCGTTAGAAAGAGACGGTCGTGGAAAAATCGTTGGAAAAGTGTAAACAGACTAGAAAACAGCGGAATTAAACTGTTCTGAAGCATTGTTACTTTGTCACCCGAAGAACGGAAACCGTCGTCGCTTTTCGCCGGTACCGAGGATAACACACAACTTCCCAAAGAGGAATTCACTCATTCAGGATGTCGGAGTGAAACAAAGAGGTCTGAGGGTATTCCTGTCGGAAAGGGGCTGAACTTCATCCTTGTGGCCTTCTCTGAATGGGAAAGATGGAAAGGGAGTTACAATGGTGGAAAGGACAGCTAGCAGGGGATATCCATCAGTCCCTCCGCATCAAGgAGTTGAAGCTGCCTGTGTACCGGGCCCACTCCCCTCAGATAGGGATGCGTCGGTACTTTGCAGACCTACTGGCCATACTGTCGAACCGCTACCAGCTGTGTCCTACAGCCAgacacctgtctgtctacctactGGACCTGTTCATGGATCACTACGATGTGGCCGTCAAACAGCTCTACGTCATCGCTCTGTCCTGCCTGCTCCTTGCCAGTAAGTTTGAGGAGAGGGAGGACCGAGTACCTAAGTTGGAGCAGCTCAACTCCCTGGGCTTCATGTGTTCTCTGAACCTTGTTCTCAACAAGAGAGACCTCATCAAGATGGAGCTGCTGCTGTTGGAGACGTTCAGCTGGAACCTGTGTATGCCCACCCCGGCCCACTTCATAGACTACTACCTCCAGGCCTCGGTGCAGGAGGGAGACCTGTACAACGGctggcctctctcctccctctccaagACCAAAACCTTTATGGACAAGTACACACACTACTTCCTGGAGGTGTCACTGCAagACCATGCGTTCCTGAGTTTCCGGCCGTCTCAGGTGGCGGCAGCGTGCGTAGCTGCGTCTCGTATCTGTCTCCAGATTTCTCCTAGCTGGACCACGTCTCTACACCTATTGACTGGATACACCTGGGAACACCTCACACACTGCATCAAACTCATGCTGCTTGCCCATGACAACGATGtgaaggaggccaacaaacccaAATCCACCCCTCCGTTGtcttgctcctcctctctccagtcccaccctcctccctcccacctctccccaGTCCAGAGACCAGCTACCTCCTCCAACCCCCAGCAGCTCCTTTTCCAGCCTGGCCCAGTGGGCTTCCCTCACCTCTCCCAGCACTCCCCCTCCTTGTCCCAGCTCCACACGCTAGCTGACTCCCAGGCTTTGGGGCCTGCTGTGGTCAACATGTCCCAGGACATCCTCCAAAGCCACAGGATGGGGCTGCTCACTGGGGCCAACACCATGACCTCCACAGCAGGGACCTTCCCCTCCTATCCTAGCCTGACTTCGGGGCTGCTCACTGGGGCCAACACCATGACCTCCACAGCAGCGGCCTTCCCCTCCTATCCTAGCCTGACTTCGGGGCTGCAGCCTGGGGCTCGGGTGGCACCGCTGGCCTTGCAGGGCCCCATCTCCATGCAGGTAGCCTTGGCTGCGGAGCCGAGACACTGCCTCAGCATGGCCTACACCGGAGGGTACCTGGGGGGCGTGGGCCCCCACCACACCTTCACGGCAGCGGGCTGCTTCGACAGGTGACGCCAGGAGACGGAGGAGAGGATGAACAGCAAACTGCCCCGAGCCAGGGACAGGGAGCGCTGCAATCCTCTTCCCTCactacttcctcctcctctccgctcCCTGGCagacctcctctccatctccgtcAGCACCCCGTCCCCCTCCTCTGCCGCACCCCGCCCTGCGCCCCCCACCctcagacagagacggagagaaagacggCTAAAACACAAGCAAAGGTCAAAGGGCACCGATGACCCCGTGGAGGTCATCACACTGACATGACACCTGACGTCACTGACTGACTGTTGAACACTGTGTTCCGATCCCGTCGCAGGAACGTGATTCCAAGGCAGAAGCATTAAAACACTGTAGAATGGTCACCGTATGTCCCTGGTTAAGATGCTGTTATCACTGTGAACCAGAGGCTATGCAGCATGATTCCTCCTCAGTGCCTCCTGGGTTTTGACCAgagtgatgtctgtctgtctgtctgtctgtgaattCAGCTGAAGATGAAGTGCTGCTGGATCTCTCTCACTCTAATCCCAAAAACAGATCAACTCAACTGAAGACGAGTAATTGGTCAGTAAAGTGACATATTGAGCTGCTGACTTGAGAACAGTGGTATGAAGTGTTATAAGTAGACCTACCAGTGAGTTGAAGAGGCTGTGTCACTTGCTATGTCAGCCTTATATCACTCTTATGCCAGTGAATAAAGGGATTATGTCACTCGTGACTAAGTGCTCCAGGGGCATTCTGAGAATTCCTACCCCAAATCCTCTCTGGTTGAGGAGGGGAGACCACAGAGTTCATTGTTCTGTCACAGCAGGGGAAATCCATAGTTTTAACATAGCTGTCATGTTTTGGCTTTCTCTTCTTTCATCCTTCCTCCTTCCTTGTCACCTCTCCTTACAGCCTTtattctcccttcctccctccttgtCACCTCTCCTTACAGCCTTTagtctcccttcttccctccttgTCACCTCTCCTTACAGCCTTtagtctcccttcctccctcctcgtCACCTCTCCTTACAGCCTTtagtctcccttcctccctcctcgtCACCTCTCCTTACAGCCTTTagtctccctttctccctccttgtCACTTCTTACTTTTTGCAAAGTCTTGTCTTGTGGTGGAGCTCTCCTCATATCTGGATCTTTGTTTccagaaaggggggggggggggggttccaacCACCAAGTCTCGTAGTGAGGGTTAAAGaatgaagctctgttttccacgTCCTTCCACTCAGACTTCAAGTGGAAGTGAACTGACACGGAATGCTCATGGTTAAGGAGACTtggaaacatagaaatagaatgattgGCATTCTAATTCTATGCTTAGAACTCTGTTGAAGTAGATAATGACATTCTGCTGCCTTCTATTAGAAGTGATGGTTCTGTGTGAGCTGAAGACTTGTTTCCATGAACCACAGCGTATATCAGGGACTTGATGTAACGGATTACTTGAATACGATGCCATTGAAACGTGCCGTAGCTTCTTATTTATATGGACACATCTATTCCTTGTTGCTTTATTTTGTATTCTTTGGTGAAGTAAGTTTAGTTTTAGTTTTTAGTTGGTTTTTTTATACCCGCGTGTAATGTGTTTTTCTGTGCCCTTGTATAACTGTATATTCAGGCTCAGGTTAGGCTGTGAATATCCAATCAGCCGTCTCCTTATTGCTGAGGTTACCCAATCAGCTGTCTTCTTACTGTGTCCTATTGAGTGTGCTTTAAGTAGATACTAGCATGGCACCCACGAGGGTTTCTCACTGATCTACCTCTCTGAGGAAGAGGACCTTCATTTTTAAATAACATACTAAGATATATAAACAAACACCAAATTTGCATCCTGGTAGAATCCGTGACCTTCCAGACGATGAAACACACAGCCCATCTGCAGCTTGTCATTACTAATAGCTTCCCACATTCCCAGCACTGCTTTTCCCCATACTTCTActtcctgttggaacgtaaacACATCCAGATTCCCCTTCTGGGTCACAGGGGGTCTCGCTGGTTACCGTGGCGATggccaaataaaaatctaaatcGGGGGCTCACTCAGAAGGAGAGTTAGTTGGAACGTTACAGAATGTTTAGATAGAAATGTGCTGTTTAGATCAGCTATGGGTATCTGTTGTGTAGAGCAGGGAATAGTGGAAGCTCTATAAatcacatttctatctgcaacgatGTAAACTTCTGGTCCTTTTCTCTGTCCGTATGCTATTGAATGTGTATGTTTTTACTATGGTTGTACCTTGTCCCCAGCAGTTTTCACACTTGAACTATGCTGATACTACTAAGGCTGTGTTCTGGTTCTCAGAACATGTTCTATATAGGTTTTTATGTTGTGATTCTCAATGTTCTAGGCTTGGATATCAGAGATTTATTGAAATGAACGCTGTATGAAGCTTGCTTAAGCAAGTTATCTGTCAAGCATCTGAAATTTGTCTAAACTTTTTTTATAGCATGAACATACCTTACTGTAGTCTAGATAGTAAATTACTAGAAATGGAATGAAGGGCTTACTAGAGTATGTTACTAGCAACCAAATGTATCTTTCTGCCTGATCTCTTCTGAACTATGTCAATCTACCCAGACTCAGTCACTGTACGTTCATCACTACTTTTTATAGACAAAGGGATTCTGTCTTTTTTGTTAACTACAGTTTATTTTACATTCCTATTATTTTAAGTGTATTTTATTTACTCCTGATCTGTGTTTAATAAAGATGGATGCAGTCGGTGTGGAGTagtgggtcatattcattaggcaccaaacggaagaaaacggaCAAACCGGGAGGGACTATATGAACTTGTCCCAAAAAGAACGCTTTTTTTTTTCtgtttgcaaaatgttttgctacggtgtgacctaatgaatacgaccctgttTTAGATAAAAGAACTCAAGTCTTTCCCTCACTAAAAAGCTACTTCTCACCGAGGTCTCAAGGTGCAATATGTTTTTGTTGGTAGAACCATACCATTTAGAATGATTCCTTCTATTTCTACGGCTAGAAGTCTTCTCTCACAGCCGTCACTGTCTTGAGGATAGCCCTCACTAACCGGTTCATCTTTTCTAACTTAATTCCTTGACATTATTGTGTGATTTGACTCGACGTCGATCCTTGCTGCCAGAAAGCCGAGAGCTCTGAACACTATGTTGCACATTGCAGCCTTGATTGGTGTACTGTACGTGTTGCTATAGCGATACTGTGCATGTTTCTATGTCCACAGAACTGTGctgagaaaaacacacacacacacacacacacacacactacttgtCCAATGAAATGACACCAGAAATGTCCCACGTCTATTTTTGTAAAGCTGTTTTTGTAGCCTTTGTTGAAGTGACACTCAGAGAAGTTTCTTTTTTTATCCGATGAGCCAttgaaataaacaacaacaaataactAAATA

Function


NR:

description
PREDICTED: cyclin-J-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036969785.1 True 5141 mRNA 0.48 6 9106690 9145483

Neighbor


gene id symbol gene type direction distance location
LOC110504524 LOC106612240 coding downstream 5779 9090505 ~ 9100911 (-)
LOC110504525 tmed9 coding downstream 16478 9086106 ~ 9090212 (-)
LOC110504523 LOC106612238 coding downstream 20726 9080162 ~ 9085964 (-)
LOC110504521 LOC106612236 coding downstream 35576 9049820 ~ 9071114 (-)
LOC110504535 fat2 coding downstream 247476 8780500 ~ 8859214 (-)
c1qtnf2 c1qtnf2 coding upstream 108 9145591 ~ 9148916 (-)
LOC110504362 LOC106604211 coding upstream 7749 9153232 ~ 9197578 (-)
LOC110504530 NA coding upstream 52227 9197710 ~ 9200039 (-)
LOC110504532 LOC106612246 coding upstream 61694 9207177 ~ 9211391 (-)
LOC110504534 atp7a coding upstream 123095 9268578 ~ 9339744 (-)
G2249486 NA non-coding downstream 3534 9102889 ~ 9103156 (-)
G2249442 NA non-coding downstream 95606 9010640 ~ 9011084 (-)
G2249352 NA non-coding downstream 133859 8969456 ~ 8972831 (-)
G2249348 NA non-coding downstream 142250 8964228 ~ 8964440 (-)
G2249345 NA non-coding downstream 144222 8962213 ~ 8962468 (-)
G2249507 NA non-coding upstream 4858 9150341 ~ 9151226 (-)
G2249508 NA non-coding upstream 5865 9151348 ~ 9151557 (-)
G2249621 NA non-coding upstream 9970 9155453 ~ 9155873 (-)
G2249613 NA non-coding upstream 70644 9216127 ~ 9218429 (-)
G2248668 LOC106612284 other downstream 949157 8153911 ~ 8157963 (-)
G2248522 NA other downstream 1065210 8040876 ~ 8041480 (-)
G2247813 NA other downstream 1850750 7255344 ~ 7255940 (-)
G2247565 NA other downstream 2082151 6938623 ~ 7024539 (-)
G2247416 NA other downstream 2235590 6870587 ~ 6871100 (-)
G2249506 NA other upstream 4405 9149888 ~ 9150141 (-)
G2250247 NA other upstream 806834 9952317 ~ 9952703 (-)
G2250775 NA other upstream 1380308 10525791 ~ 10526568 (-)
G2251534 NA other upstream 1551709 10697192 ~ 10698407 (-)

Expression



Co-expression Network