LOC110504532 (LOC106612246)



Basic Information


Item Value
gene id LOC110504532
gene name LOC106612246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 9207177 ~ 9211391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>LOC110504532
TTACTTGGCCGATGGACTTCACTGGCCCCCTTAATCTGGGCTTTTCTGCCACCGTGTGGTTACGAATGGGAACTAAATTGTGGTCTCGGTATCAAAATAATAAACCTATCAAAATAAATCCCATGAATATTGTGGAAAATAGTGTAAATAGATATACTGCTAATCAAATGCATAGGACTACTGTGCATTCACAGTGAATAAATACAATGGACTGGCTGGATTCAAGAACAACTATACAGAATTTGAGGCGGCTCATCAGGTTTATGACACACGCATGCGCATTGAGTTTTATCCCAGACAGCAGTAGGAGATCATGGTTTGTGCAATAAtgaatccttgggacatcccaaCCCTGACGTTAGCttattgaagttgacatttaaaatggttaaggtaaggtttaAGGTAAGTGTATGGGTTAAGGTTTATGGtatggacgtcccaaggattccaTATACCACTAACCATGAGAAAATGGCAGCAACATTGAGGCATGGATGACATCAGGTCCGTCAGGTCAGCACTTCGCTGACCAGGCAGGTTTCTGGTCACGGCAAGCAAAGCAGGACATACAAGCTACTGGAAGGGCTCAACATTCCACAACAACTATGCAATGATGACTGACGACTTCAGAACGATATTATCAAACACAGGCGTCTATAGTCTAAAGATGTAGCCGTCACAGTCAAAAATAGGCAAAATATCTCAATATAATCCTGAAACTTCTAATGGGTGCAATGATTTACCCTCTCTGCAGCCTGTTTATGCCTCCCATCCAGGTGTATGGAGTTGAGGGTCGCTATGCCTATGCTCTCTTTTCAGCAGCCAGCCAGCAGGGCAGACCGGAGCAAGTGGAGAAGGAGCTGATGACAGTATTTGCCCTAGTCAAGGACCCCAAGTTATCTGGCATCATGGTGAACCCCCATGTTAAACGCAGTATCAAAGAGCACACCTTCACTGATGTCatgaccatcatcatcatcatcaacgtCCTCAATGTTATGGCTGATAACGACCGTCTGACGCTGacctctgacatcatctcagCCTTCAGCAAGATGATGAGTGCTCACCGTGGAGAGGTCCTCTGTACTGTCACCACCACACAGCCTCTGGATGCTGCCATCCTCAAAGACCTGAGAGTTGCTCTGAATGGCTTCCTGGCAAGAGATGCTCAAGCTGGAGACTAAGTCGGACCCCTCCATCCTGGGTGGAATGACAGTCAGCATCAGGGACAAGTATGTGGACATGTCTACTGAGACCAATATCCATAAACTGACCAAGATCAGTAGGGAGACCTAAGAAttggcttgcgtcccaaatggcaccctattccctatgtagtgcactatgtttgaccagggccctatgtagagcaggtagcctagcggttaagggtGTTGGGCCAATATCGGAAAGgtctctggttcgaatccccgagctgaataGGTGAtcaatctgtcaatgtgcccttaaGCAATGGACGTAACCCTAACTGCacttgctctggataagagtgtctgctaaatgttcaaaatgtaaatgtctgagaccaggctgagggaatagggtgccatttgggatttttttttttttttacatttatgcaTAATCAACTGGAACTAAGTCCTATGGACTCAATAGGGAATGAATGGGTAGTGGAACAATGTTCATGGGAAATGTTTATGTACAGAgcattcggagagtattcagaccccttgactttttccacattttgttacgttacagtcttattctattcacaatatcccataatgacaaagcaaaaaacagttttttagactttt

Function


NR:

description
PREDICTED: ATP synthase subunit O, mitochondrial

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
LOC110504532 True 1808 mRNA 0.44 6 9207177 9211391

Neighbor


gene id symbol gene type direction distance location
LOC110504530 NA coding downstream 7138 9197710 ~ 9200039 (-)
LOC110504362 LOC106604211 coding downstream 9599 9153232 ~ 9197578 (-)
c1qtnf2 c1qtnf2 coding downstream 58261 9145591 ~ 9148916 (-)
LOC110504527 LOC106612241 coding downstream 61694 9106690 ~ 9145483 (-)
LOC110504524 LOC106612240 coding downstream 106266 9090505 ~ 9100911 (-)
LOC110504534 atp7a coding upstream 57187 9268578 ~ 9339744 (-)
atp10b atp10b coding upstream 148442 9359833 ~ 9417860 (-)
gabrb2a gabrb2 coding upstream 217592 9428983 ~ 9519457 (-)
gabra6a gabra6 coding upstream 310495 9521886 ~ 9547984 (-)
LOC110504545 LOC106612230 coding upstream 341255 9552646 ~ 9559415 (-)
G2249621 NA non-coding downstream 51304 9155453 ~ 9155873 (-)
G2249508 NA non-coding downstream 55620 9151348 ~ 9151557 (-)
G2249507 NA non-coding downstream 55951 9150341 ~ 9151226 (-)
G2249497 NA non-coding downstream 72627 9134284 ~ 9134550 (-)
G2249613 NA non-coding upstream 4736 9216127 ~ 9218429 (-)
G2249646 sfxn1 non-coding upstream 12648 9224039 ~ 9228679 (-)
G2249654 NA non-coding upstream 22925 9234316 ~ 9234809 (-)
G2249668 NA non-coding upstream 80589 9291980 ~ 9293304 (-)
G2249671 NA non-coding upstream 85064 9296455 ~ 9297919 (-)
G2249506 NA other downstream 57036 9149888 ~ 9150141 (-)
G2248668 LOC106612284 other downstream 1049644 8153911 ~ 8157963 (-)
G2248522 NA other downstream 1165697 8040876 ~ 8041480 (-)
G2247813 NA other downstream 1951237 7255344 ~ 7255940 (-)
G2250247 NA other upstream 740926 9952317 ~ 9952703 (-)
G2250775 NA other upstream 1314400 10525791 ~ 10526568 (-)
G2251534 NA other upstream 1485801 10697192 ~ 10698407 (-)
G2251734 LOC100194703 other upstream 1876478 11087869 ~ 11092460 (-)
LOC118946018 NA other upstream 1968616 11180007 ~ 11183379 (-)

Expression



Co-expression Network