LOC110504986 (LOC106611761)


Basic Information

Item Value
gene id LOC110504986
gene name LOC106611761
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30517331 ~ 30524440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583910.2
CTTTTTCATAGAGATGCTCGCGCTCCCCACCCCATCAAGCACGCGCAGTTTAGCGCGTCCACGTGGTGTATCAAGTGTGTGCGAGACATTACAGACGCTGCATCACAGCTCATTCAATTTCTATCCAGACGCCGACCAATTCAGAGACAGCTATGGCTTCCGGGGTGACAGTGACAGATGACGTTATCACAGTCTTCAACGAGATGAAAGTGCGCAAGTTGCAGGCAAACGAggatgagaagaagaagaggaagaaggcgGTGCTGTTCTGCCTTAGTGAGGACAAGAAGCACATCATCCTGGAGGAGGGTCAGGAGATCCTGACAGGAGATGTGGGCGTCACCGTCCAGGACCCCTACCTGCACTTCGTCAAGATGCTGCCCCCAGATGACTGCCGTTACGCCCTTTATGACGCCACCTATGAGACCAAGGAGACCAAGAAAGAAGACCTGGTCTTCATCTTCTGGGCCCCAGATGGTGCTCCCCTGAAGAGCAAGATGATCTACGCCAGCTCAAAAGATGCCATCAAGAAGAAGTTCACAGGTATCAAACACGAGTGGCAAGTGAACGGTTTGGAAGACATCAAGGATCGACGCACCCTTGCAGACAAGCTCGGCGGCTCATCGGTAGTCACCCTGGAAGGAAGCCCTATATAAATCTAGCCCCAGGCTTCAACTGAAGCCAAACACATCTGAGGGGATTGTCTGTTCATTCCAATATGGTTGGGAGGAGGGGCGACGCAGGACCAGGATCATTTGTGGGACTGTTAAGGGTGGGGGGACAGTTTTCAAATTCCATAACTGCAGGCTTTCATTCCagttcacacaacacaatgaaaatgaacaaaatacacacaaaaaggggaaaaaagcaataaaataaaataaaaatacaaaattgaAGGATTATGAAGACTAAATACACAATGTAAATGTttgaggacagggttttgttctctctggattccattagaatgacgaTCGCAGAGAAAGGGACCGGCAACAACTTCACAATTCCAACTATTGAATCCTCCAAGATATATTATACTACTACCTTTTTTGCCTAACTTCTAGTTAAGTTTTCTAAGTGTGTGTAGCTGAGACTAGGTGTAGTACAAAACCATTTATTCTTGATTGCACAAGATTCATCAACCTATTCCAGGGGAACACATTTgctttaattgtatttatttttttacatgcaAATTCCAAAAATGTTGACGTGATTAGTTATTATTTCCAGTTCTGAGTAAAAACAACATGGCATTGATGTAataatttaacacattcctcAAACAGGATCTGGTAGGGTTAGAAGTCTGAATTGGGTCATGTGACGGTAACATGGGGGCGATTTATTTGAAGAGCCTGTGTTCAGAACTTGGACTGGTATTGAATTGGTGGATGTTTTGTATGGTCTCCTTGTCTCTAATAAAAAGGCACTAAATGAGTAACCTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K05765 CFL; cofilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583910.2 True 1457 mRNA 0.44 4 30517331 30524440

Neighbor

gene id symbol gene type direction distance location
LOC110504985 LOC106611760 coding upstream 948 30502069 ~ 30516383 (+)
LOC110504984 LOC106604710 coding upstream 17172 30496632 ~ 30500159 (+)
LOC110504982 yif1a coding upstream 20883 30488564 ~ 30496448 (+)
LOC110504981 LOC106611758 coding upstream 37438 30476682 ~ 30479893 (+)
LOC110504976 mrpl11 coding upstream 134091 30321823 ~ 30383240 (+)
LOC110504990 LOC106611765 coding downstream 75589 30600029 ~ 30611248 (+)
trnaa-agc-11 NA coding downstream 128239 30652167 ~ 30706266 (+)
trnaa-agc-12 NA coding downstream 129531 30653971 ~ 30654043 (+)
trnaa-agc-13 NA coding downstream 129843 30654283 ~ 30654355 (+)
trnaa-agc-14 NA coding downstream 131948 30656388 ~ 30656460 (+)
G2270478 NA non-coding upstream 89924 30382613 ~ 30427407 (+)
G2270407 NA non-coding upstream 253435 30263545 ~ 30263896 (+)
G2270388 NA non-coding upstream 285347 30231773 ~ 30231984 (+)
G2270382 NA non-coding upstream 301127 30215906 ~ 30216204 (+)
G2270553 NA non-coding downstream 228 30524668 ~ 30524958 (+)
G2270557 NA non-coding downstream 8461 30532901 ~ 30533121 (+)
G2270573 NA non-coding downstream 18340 30542780 ~ 30543017 (+)
G2270572 NA non-coding downstream 51068 30575508 ~ 30577126 (+)
G2268400 LOC106611722 other upstream 1619252 28896755 ~ 28898079 (+)
G2268340 NA other upstream 1749602 28766877 ~ 28767729 (+)
G2266826 NA other upstream 3581442 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 3896383 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 4144848 26298775 ~ 26483992 (+)
G2271027 NA other downstream 652450 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 2338996 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 2891650 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 3677643 34202011 ~ 34207415 (+)
G2274048 NA other downstream 3707555 34231995 ~ 34232604 (+)

Expression


Co-expression Network