G2248500 (LOC106594768)


Basic Information

Item Value
gene id G2248500
gene name LOC106594768
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 8013360 ~ 8016525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2571420
TGTCTATGAGGTCTTCAACGATCTTCACTTCGTGTTCTCCTTTCCCGTCTGTCTGGAAGAGGCTGGGGGCGAACAGCAGGGACAGGTTCTTGGTACACATCTGGTTCAGGTCTGCACACTTCTGAACCCTGTAGAGGTGGCTGATGAGAGCAGCCAGGGTAGTCCTGTTGACTCTAGGTAAACTACGGATGATCTCCTTGTATCTGTCCAGACGCTGGTTCTTATCCTTGGCTGTTCTGACAGCCTCCTTCCATAGCTGATGCAGGTCAGCCATGAAGATGGGGTCGTCTATCTCCCTGAAGAACCTCTTCAGGACGTCAGTCACATCCTCTATGAAGTTATCCCCGATCCGAAGCTTGACGTTGCGAGCATCGTTCCTGAACTCCTCCATCAGTAGTTTGATCCTGGACGTGGCTCCGTTCTTCCTGTAGATCCCCTCGTGACCCAGACCTGACGAGCAGATCACACATCAAATCCAGTACATCAGTCATCGGC

Function

NR:

description
arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2571420 True 495 lncRNA 0.52 3 8013360 8016525

Neighbor

gene id symbol gene type direction distance location
LOC110504485 tgfbi coding downstream 86601 7896711 ~ 7926759 (-)
LOC110504484 smad5 coding downstream 121182 7871894 ~ 7892178 (-)
LOC110504356 LOC106612292 coding downstream 142261 7858125 ~ 7871099 (-)
LOC110504483 LOC106612297 coding downstream 163490 7835243 ~ 7849870 (-)
LOC110504480 LOC106612296 coding downstream 287568 7698183 ~ 7725792 (-)
LOC110504508 LOC106612286 coding upstream 74509 8091034 ~ 8104745 (-)
LOC110504516 LOC106612282 coding upstream 156696 8173221 ~ 8224552 (-)
LOC110504517 LOC106604175 coding upstream 233007 8249532 ~ 8264238 (-)
LOC110504538 g3bp1 coding upstream 600439 8616964 ~ 8627201 (-)
sparc sparc coding upstream 621063 8637588 ~ 8656945 (-)
G2248456 NA non-coding downstream 84203 7928526 ~ 7929157 (-)
G2248439 NA non-coding downstream 148788 7863615 ~ 7864572 (-)
G2248432 NA non-coding downstream 161771 7851365 ~ 7851589 (-)
G2248436 NA non-coding downstream 162311 7850743 ~ 7851049 (-)
G2248510 NA non-coding upstream 5795 8022320 ~ 8024911 (-)
G2248514 NA non-coding upstream 19483 8036008 ~ 8036219 (-)
G2248519 NA non-coding upstream 22519 8039044 ~ 8039284 (-)
G2248521 NA non-coding upstream 22919 8039444 ~ 8039649 (-)
G2248708 LOC106612280 non-coding upstream 133022 8149547 ~ 8149918 (-)
G2247813 NA other downstream 757420 7255344 ~ 7255940 (-)
G2247565 NA other downstream 988821 6938623 ~ 7024539 (-)
G2247416 NA other downstream 1142260 6870587 ~ 6871100 (-)
G2246314 NA other downstream 2160761 5848119 ~ 5852599 (-)
G2245152 ctnna1 other downstream 3391370 4535841 ~ 4621990 (-)
G2248522 NA other upstream 24351 8040876 ~ 8041480 (-)
G2248668 LOC106612284 other upstream 137386 8153911 ~ 8157963 (-)
c1qtnf2 c1qtnf2 other upstream 1130266 9145591 ~ 9148916 (-)
G2249506 NA other upstream 1133363 9149888 ~ 9150141 (-)
G2250247 NA other upstream 1935792 9952317 ~ 9952703 (-)

Expression


Co-expression Network