XLOC_000042 (si:ch211-132g1.7)


Basic Information

Item Value
gene id XLOC_000042
gene name si:ch211-132g1.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1941031 ~ 2000357 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000080
gtgtgtgtgtgagcatgagagagagtgtgtgagtgagtgagtgacgcTCCTCCAGTCTCTCGTAGGGAATCCCGCTCCACTTCCGTCATTCGGTTGTTAAACCTCCGCGAGCGCGCATCAATCACGGGACGGACGAGGCGGCCAGTCATCACACGTTCGCGCGCGAACCAGGCAAATCCTGACCTCATCACATCCGCGAGGGGCTCACAGGTGTATCCCGAACCGGTCGGTCTGTCCGCGGCTCGTTACCGGGAATACGGCGCGACATGGGAATGACACGAGTCCTGATCCTGCTGTACGCCGCTGTCGGTTTATGCAGCTGCCGGTCAGTTTCGGTGTCTGGGGGCCCTTTGCTCCGGGTGGAGGGCCAGCCACTGTCCATCCGCTGTGATGTGTCCGACTATGAGGGCCCCAGAGAGCAGGACTTTGAATGGACTGTAACACGAGAAACAAAAACCATCAACGTGATCTCCACATTCGATCCTGCATTCTCAGACCGCTCTCTACAGGACCGCATAAAGACCGGCGACATTAGCATAGCACGACTTGCGGACAATGTAGTGGAACTGAGGATTCAAGAGGCTCAAATTAGCGACAGCGCCACCTATCGATGCAGTACTCCAAGCACAGACTCGGTGATAAGCGGAAACTATGAAGCATCTGTTCAGCTGCAAGTTGTTCCCAACACTCTGATTGTGGCTCCAGATCCTCCGACGCCTGTAGTTCCCGAAGGCGGATCCATCAGGCTCCAGTGCAGCGTCTCGCGGAGCTTCATCCCGGGCATTTTTCTTTCCATAACCTGGTCAGTGAAGAACCGCTCTTCTCTCCTGGAGGACCTGCTGACGTTCGGCCCGGATATGAGCGTGACTGTGGACACCGTATCCTCTCAGCGCTACACAGATGGTGGGATGCGATTAGAGATGGGAAACGGAGTCTCGCACAGTCTGGTTCTCTCTGGAGTGACGCCGGCTGATCAGGGCCTGTATATGTGCACCGCCAGCCTGTGGACCAGAGAGCAGGGGATCTGGAGCCGCATTCAGGAGAAGAGCATGGAGATGGGGGACGTTACGGTCACACCTGCTGTGAACTCACTCGCGGTTCATGTTCAGAACGACTCCACATTATCCACTGGAGATTCGCTGGTGCTCTTGTGTTCGGTGATGGTGTCCGGTGCGTCTGCGGTGGATCTGGACGTGACGTGGCTGCAGAACGACACGCATGTTCTGGGACATCTGAGTCGAGACGGCGTTCAGactgacagcagcagcagagCAGTGGATGTAAAGCGTTTAGGAAAATGGGATTATCAGTTGAAGATTCAGGATGTGGAGACGTCTGATGGAGGATTGTATACATGCAAAGTGAATGTGTGGATTCAGCGTGACACTGGGCGATGGTATAAGGCTGCAGAGAAGATTTCTGACCCTGTTCGAGTCCATGTTATTAAGCACAaTCCGGAGTACACTGCTGTTCTGAGCTCCTCTGTGACTGCAAAGTTTTCCGGCGACCCAACTGAGTTGGAATGTAAAGTTATGAACGTGTCGAATCTGCGCAGCGGCAGACTGGGAGTGTCGTGGCTCTACAGAGATCTTCAGCCTAATGGTACTCCAGGTTCGACTCAAACCGTCGCTTCTTTGGATGAAAACGGGACTCTTGTTCCAGGTAGGGCGTTTAAGAGCCGTGTGGAGGCGGGGCTTATCACAGCCACCCGGGCGGAGCCTTCCATGTTTAAGCTCCGCCTCCTGCACACAACGGATGCAGATGCTGGTGAATATATGTGTGTAGTGAGCGCGTGGATCCCATCTCCACATGgacactggaaaaaggtggcAGAGCATCTGACACCGGCAGTTAAAGTCAGCTTCGCTAACAAGCGTCCTGTTCTGGGTGTGGTGGCTCGTCGTCTCCGTGAAGCCACAGCCGTGGGCTCCACATTTGAGATGAGCTGCCAGGCCAGTGTCCAGAACCTTCCGTCTGGATCCGCGTTCTCCATCTCTGTGCTGTCTGAGGAGTCCGTAGGAGCATCCGGCCGCAGACGGGCCTCGCTGGACCCTGACCTGCTCTTGAAGCTGGAGGATGTTGGCGAGCCGGCCCGGAGCCACAGCCTGATGCTGCTGAAGACAAAGAAGACGGAGTTTGAGTTTCGCATCCCGGCAGTTCGGCTGAGTGACCGCGGCTTTTACTACTGCGAGATGAAGGCCTGGACCAGGCAGATCGGGGACGAATGGGTGGAAGTGGCCAAAGGACTTTCCAATAAAGTCCAGATCGCCTTCACACACAaagGTCCCACGTTTGATGTGTCCATCAGCTCGGACGTGAGCAGTGTTTTCCCCTGGGAAACGGTGAAGATGGAGTGTGACGTCAGTGTTAGCGGCACGTCTCCATCCGCAGATGACGTGGCGTACGAGCTGAAGTGGTTTCTGAGTCGTCTGCGTGGCTCCAGCAGCCCGACTCTGTTAGCCAGCATGGACCGCTGGGGCGTCGTGCGTAAAAGTCCTCGCAACGATAGCAGCGACTGCAGCCTGGAGCGTCTGGAGGCCCGAAGATTCGCTCTGAGCGTCCACAACACGCAGGATTCAGACGCTGGAGACTATCACTGCAGCGTCACGCCGTGGGTCCGCTCGTCCGTCAATGGCGTCTGGAGCAGAGCAGCTGAAATCTCCTCACAGAGAGTCTTCCTCAACGTCAGGTTCGCATtgtgGTCCTCCATGAAGCTGCCACTGCTGTACGGCATCTGTGCTTCAGCAACTGTAGGTGTTGTTTCTCTCATCCTGGGCCTGGTCTGCGCTCACTGCTGCTGTAAAACCTCCACACCCGCTACTCCTCGCTCTCGCAAACTCATGGAGCTGGAGATGGATTGACAAAGACAGTACAGTTGTCCCCTTCCAGCCTGGAAGCCTTGGTGACAACTGACGAACGCTGGGACTCGTCCCGTGACAATATGCACCACCTGTATGGAGAAAcgtacggtggccgagagagattaacgtgctgcaatttaacaaaacacaaagcaaattAAGACA

Function

symbol description
si:ch211-132g1.7 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTGFRN (prostaglandin F2 receptor inhibitor).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-287 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTGFRN (prostaglandin F2 receptor inhibitor).

Ensembl:

ensembl_id ENSDARG00000075505

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000080 True 3026 mRNA 0.55 9 1941031 2000357

Neighbor

gene id symbol gene type direction distance location
XLOC_000041 si:ch211-132g1.1 coding upstream 17778 1915967 ~ 1923253 (+)
XLOC_000040 si:ch211-132g1.4 coding upstream 29650 1904419 ~ 1911381 (+)
XLOC_000039 si:ch211-132g1.6 coding upstream 41183 1896737 ~ 1899848 (+)
XLOC_000038 atp1a1a.5 coding upstream 90927 1838164 ~ 1850104 (+)
XLOC_000037 atp1a1a.3 coding upstream 125371 1805294 ~ 1815660 (+)
XLOC_000043 NA coding downstream 1359 2001716 ~ 2005632 (+)
XLOC_000044 NA coding downstream 23052 2023409 ~ 2023645 (+)
XLOC_000045 slc5a3a coding downstream 24728 2025085 ~ 2027100 (+)
XLOC_000046 mbnl2 coding downstream 101184 2101541 ~ 2217861 (+)
XLOC_000047 rap2ab coding downstream 222006 2222363 ~ 2240119 (+)
XLOC_000034 NA non-coding upstream 321717 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 362780 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 580200 1358731 ~ 1360831 (+)
XLOC_000030 NA non-coding upstream 598794 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 non-coding upstream 722226 1218691 ~ 1218805 (+)
XLOC_000049 CR352215.1 non-coding downstream 275248 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 402746 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 1718309 3718666 ~ 3720603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_00097393_00132755 NA coding CI01000299 null 97393 ~ 132755 (+)