LOC110495334 (LOC106575937)


Basic Information

Item Value
gene id LOC110495334
gene name LOC106575937
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 762579 ~ 768787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972394.1
GTAGCCACTCCTTCCTCTTTACTccgtccttccctctctctctctctctctctctctctctctctctcgctttttcaGAAGAACAGGGCGTCCGACAGACGCAGAGAGGCAGGTCTCCTCACTGCAGCTCCAGGCCTATATCTTCCTATCTGAGCCACTATGAACCTTGTGAACAGCAGCCAGTGGTTCCTGACCCAGCCGTCTCCCAGCCCAGCAGGACCCAGTAAAGGACTGGGCTGTAGTAATACCTGGCAGGCAGAGACAGGCCGCATCACTCAGATGATAATCACCGTGCTCATCTTCCTGGTGGGCGTGTCCTTGAACACCCTAGTGGTGTATGCGTTGGCCTGGCGTGGGCGTGGCCGCCTGACGAGGCGTGGCAGCTTGGGCCAAGGGGAGACGCGCGGCGCCAGCAGCTTCCGTGTCTACGTCGTGAACCTGGCGCTGGCtgacctggtcctcctcctccgcaCCCCTCTGATGCTGGCGTACCTGGCCCACAGCTGTAGCTGGCCCGTGGGGAAACTGGCCTGTCGCCTGGTGGTATTCCTGAGAGGCTTGGGACTATACGCTGCAGCCTTCCTGCTGTGTGCCGTGGCTGTGGAGAGATGTCTGTGTCTCCTCAGGCCGGTCTGGTCCAGTCTGAAGCGTCCTCGCTGGGCAGTTCCCCTGGTGTGTGGTCTCCTCTGGGGGCTGGCTGCTGCCCTGGCTACCCCTTACCTCCACACTGCCGACCTGCTGGAGATCAACGGTACTACCCAGTGTCTGGAGAGCCTGGGGTACAGCACGGGGCTGTTTGTGACCGAGACGGTGGCCGGGTTCCTCCTGCCACTAACGGTGTTCCTGGTGAGTAACGTAGCCGTGCTGTGGACCGCCAGGCAGGCAGGGGTCTCCGGACCgacctctccatcctcctcttcggCGACTGCGAGACAGATGGCCAGACTGTACCGGGTCCTCTTCCTCACCatgcttctcttcctctcctgctgGGTCCCCTACTTTACCTGCCGCTTCCTGCGGGCGCTGGCTGCAGGGCGGCCTGACCGGACGGGGCTCTACCGGGCGTCGTTCACGGGGGCATACGTCTCTCTGTTCCTGGTGTACCTGAAGAGCTCCCTGAACCCTGTCCTCTACGTGTTCGCCGCCCGAGGCCTGGGGCGAACCGTCCGCGCCTCGCTCCCCTCCACCATTGAGAGAGTCTTCAACGATGACTATTCTGACTCCAGGAGTAGACGGACCATAAGGAGGGAGGATTCACAGATCTAGTGCCCTAAAAAGCCCTGTTATAGGGACCGTACATATGGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATGGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATGGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATTGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATTGGAGATTCACCGATCTAGTGCTCCAGAATCCTGTTAAAGACCTTGCATGTTTTACTAGCAGACTGTAGAGATCCATTGTGACTGCTGGCCAACATGAACTCAGACGTTACAGGCTTACTTCAGCCCCGTGTGGACTACATGGACTGCATTATTATAGCTATAGGCATTATCTTAGGCTTGGTGACAGGCTTGCTTCAGCCCTGTCTGGTCTACATTATCAGGACTATATTGCATTATCTTAGGCTGGGTGACAGGCTTGCTTCAGCCCTGTCTGGTCTACATTATCAGGACTATATTGCATTATCTTAGGCTGGGTGACAGTCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTACATTGCATTATCTTAGGCTGGGTGACAGGCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTATATTGCATTATCTTAGGCTGGGTGACAGGCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTATATTGCATTATCTTAGGCTTGGTGACAGGCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTATATTGCATTATCTTAGGCTCGGTGACAGGCTTGCTTCAGCCCAATGGCGTCATCAGACCTGGGCTTTCTGGGATTTAGCCCCGAGTCTTGGTGTAAAACAAGCTCAGCTacactgcattacacactgcaacGAACTCTCCAATCATGAGCCCTGTCCTGGCCTGCCTCTTCAGTGATGCCTAAAACCACCATTTCTGTGTACGGTGGCACTTTAGGAGGCCCGAGTCACAGTGATTTATCATCTCGCTACATGGTAGATGGGTTGGCTGCCAACGATGTGCGCTCCTCCTCAGcctgttgtggttctggatggccagacTGCTCGCAAGAGAGACACTGTCATTAGAAGGAATCAATCAGGGCTTATTTCAGCATGTTTCatcttgttattgataccatgttgtgttttgaggtgttttgactgatttcatgtcaatgcaaatgtattttttaaaaaaacaaacgtGTGATAACTTGCTCACCgtcaactgtaatgatgtatctGAAACAACAAGGTCATTGTGcaaatgttgttttgttttttccttcCAATAAACATcggagactaaatatagtttcCACGTTAACAA

Function

NR:

description
C5a anaphylatoxin chemotactic receptor 1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972394.1 True 2669 mRNA 0.53 3 762579 768787

Neighbor

gene id symbol gene type direction distance location
LOC118947129 NA coding upstream 166242 595503 ~ 596337 (+)
LOC118947131 LOC103365236 coding upstream 457338 107069 ~ 305241 (+)
si:ch73-41e3.7 NA coding downstream 42700 811487 ~ 817841 (+)
LOC118947137 NA coding downstream 176665 945293 ~ 946912 (+)
tpp2 tpp2 coding downstream 210806 979593 ~ 1046298 (+)
blzf1 LOC106575890 coding downstream 433250 1202037 ~ 1209051 (+)
pibf1 pibf1 coding downstream 447290 1216077 ~ 1301282 (+)
G2339859 NA non-coding upstream 7506 753948 ~ 755073 (+)
G2339858 NA non-coding upstream 8895 751848 ~ 753684 (+)
G2339848 NA non-coding upstream 15843 734293 ~ 746736 (+)
G2339853 NA non-coding upstream 19026 742159 ~ 743553 (+)
G2339847 NA non-coding upstream 28301 734077 ~ 734278 (+)
G2339875 NA non-coding downstream 24948 793735 ~ 797599 (+)
G2339891 pros1 non-coding downstream 56341 825128 ~ 826439 (+)
G2339896 NA non-coding downstream 63018 831805 ~ 832307 (+)
G2339869 pros1 non-coding downstream 66161 834948 ~ 838462 (+)
G2339899 NA non-coding downstream 72719 841506 ~ 843332 (+)
G2339795 NA other upstream 77031 683344 ~ 685548 (+)
G2339478 NA other upstream 298112 463198 ~ 464467 (+)
G2339343 NA other upstream 664723 97115 ~ 97856 (+)
G2339912 NA other downstream 102320 870947 ~ 900840 (+)
G2339955 NA other downstream 203692 972479 ~ 972783 (+)
G2340118 NA other downstream 348156 1116943 ~ 1118969 (+)

Expression


Co-expression Network