si:ch73-41e3.7


Basic Information

Item Value
gene id si:ch73-41e3.7
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 811487 ~ 817841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972370.1
CATTCGCGCACTATGTCATGCACCTTGACCTATAGATGGGGGTTGAGTCGTCGCGTCGTCGCTTTTCGTTTGTAGCTTCCATCTGTCAAAGCATCATCGGAGCGGTCATTACTAATATTCAGTCGAGAGTAAAGTAACGTTTAGTGCCTTTTCTCATTGGCTTCTTTGGGTTATTGGATACAACTGGTCGCCAGAACGCATACAGCGACTATTTTTGGCTGACGAGTGCCACAAACGCATCACTTTAGCCAGGATGGAGTTAATATTGGACACCGCTAAGAGCCAGGGTCAGACCCAGAGCCAGGGGGGTCAgactgtctcccctccctcaatCTTCCCCTATCGCTTCACCTCGGACGGGCGTCTGTGTCACCGGGTCACCCAGGAGCCCTTCATGTTCCAGCGGAGCTGTGACCCAGACGCCGCAAAGAGAGAGGACCAGGCCTTATGTCTCCACATCACCCAACACGTTCACTCTCTCCTGGAGGAGCAGCTGCACCTCTTCAGGCTCTACCTCCCACCCCTCAGCAAAGAggtctacctccctcctccaccccacaGCAAGGGggtctacctccctcctccatctctcagcAAGGGggtctacctccctcctccaccagagCCTCAGGGGGACCACAGGGTCTACTTTAGCCCCCACCGAGGAGCCCCCAGCCAGGGCTACGTGTACCTCTCCCCTGGGGCCCTGGAGAGCCCTGCCACCCTGTTGGTGGTGGTCCAGGACCGGGGAACGATGCGCTGCGGGCTGTGGAGCTGGAGGGCTGCTGCCAGCCGAGGTCTGGAAAGAGGCAGCATGATCCCCTACGTGAAGAGGGTCCTAGAAGAGGGCAGCTCTGTCCTCCTGATGAACCCCAACCAGGGAGGAGGTGTTGGGGAGACTCCGGAGGAGCACGTTCACCGTGTCTGGGACCTCCTGGTGTCGCGCTGCGTCTCCCGGCGTGTCGTCGTGGTAGCGCACGGTTATGGAGGCCTGGCGTTCGTGGACCTGCTGTGCCGACGCCCACAACAAGTGGTGGGGCAGGTGTGGGCGGCGGCCTTTCTGGACTCCTCCCACAGCCTGTGGCACCAGCAGTTGGACGCGGTGGGCCGGGAGTGGCTGAGGACACGCTCTAGGAGGTGGGTACTGAGCTCCAAGCCCCTGAACCAGCCGGTGGGGTCGCTGAAAGCAGGATGCCCTCAGATGTCAGCTGGGACACAGAGTCATGACGCGGCTCCATCTGTCTGCATGGAGTCTGTGTTCAGGTTCTTCTCCAAAACGCTGAGTCCTAAACCACCCACCACCTTCAGTATGGTGACCCGCAGCAGGGGCACAGTGGGACAGATCAGACCTCACAACGGGAGAGGCATCACCAGGCCTTATTGACAGCACCAGTGGGACAGATCAGACCTCACAAGGGGAGAGGCATCACCAGGCCTTATTGACAGCACCAGTGGGACAGATCAGACCTCACAACGGGAGAGGCATCACCAGGCCTTACTGACAGCACCAGTG
>XM_036972372.1
CATTCGCGCACTATGTCATGCACCTTGACCTATAGATGGGGGTTGAGTCGTCGCGTCGTCGCTTTTCGTTTGTAGCTTCCATCTGTCAAAGCATCATCGGAGCGGTCATTACTAATATTCAGTCGAGAGTAAAGTAACGTTTAGTGCCTTTTCTCATTGGCTTCTTTGGGTTATTGGATACAACTGGTCGCCAGAACGCATACAGCGACTATTTTTGGCTGACGAGTGCCACAAACGCATCACTTTAGCCAGGATGGAGTTAATATTGGACACCGCTAAGAGCCAGGGTCAGACCCAGAGCCAGGGGGGTCAgactgtctcccctccctcaatCTTCCCCTATCGCTTCACCTCGGACGGGCGTCTGTGTCACCGGGTCACCCAGGAGCCCTTCATGTTCCAGCGGAGCTGTGACCCAGACGCCGCAAAGAGAGAGGACCAGGCCTTATGTCTCCACATCACCCAACACGTTCACTCTCTCCTGGAGGAGCAGCTGCACCTCTTCAGGCTCTACCTCCCACCCCTCAGCAAAGAggtctacctccctcctccaccccacaGCAAGGGggtctacctccctcctccatctctcagcAAGGGggtctacctccctcctccaccagagCCTCAGGGGGACCACAGGGTCTACTTTAGCCCCCACCGAGGAGCCCCCAGCCAGGGCTACGTGTACCTCTCCCCTGGGGCCCTGGAGAGCCCTGCCACCCTGTTGGTGGTGGTCCAGGACCGGGGAACGATGCGCTGCGGGCTGTGGAGCTGGAGGGCTGCTGCCAGCCGAGGTCTGGAAAGAGGCAGCATGATCCCCTACGTGAAGAGGGTCCTAGAAGAGGGCAGCTCTGTCCTCCTGATGAACCCCAACCAGGGAGGAGGTGTTGGGGAGACTCCGGAGGAGCACGTTCACCGTGTCTGGGACCTCCTGGTGTCGCGCTGCGTCTCCCGGCGTGTCGTCGTGGTAGCGCACGGTTATGGAGGCCTGGCGTTCGTGGACCTGCTGTGCCGACGCCCACAACAAGTGGTGGGGCAGGTGTGGGCGGCGGCCTTTCTGGACTCCTCCCACAGCCTGTGGCACCAGCAGTTGGACGCGGTGGGCCGGGAGTGGCTGAGGACACGCTCTAGGAGGTGGGTACTGAGCTCCAAGCCCCTGAACCAGCCGGTGGGGTCGCTGAAAGCAGGATGCCCTCAGATGTCAGCTGGGACACAGAGTCATGACGCGGCTCCATCTGTCTGCATGGAGTCTGTGTTCAGGTTCTTCTCCAAAACGCTGAGTCCTAAACCACCCACCACCTTCAGTATGGTGACCCGCAGCAGGGGCACAGTGGGACAGATCAGACCTCACAACGGGAGAGGCATCACCAGGCCTTATTGACAGCACCAGTGAAGTACAGGAGTACAGTGGGAATTGAGTATTTATCTTACGGTCAGAAAGACACGTGTCTAATTCACGCGAATACATTTTCCTGGACTCTGGATGAGGTCATCCTAAATATTTAGTGTCATTTTgttaagacaccctaggtcatcCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCCTCCTAAATATTTAGTGTAATTTTGTTAAGACACTCCAGGTCCTCCTAAAtatgtagtgtcattttgttaaGACACTCCAGGTCCTCCTAAATATTTAGTTTCATTGTGTTAAGACTCTCCAGGGTCGGACTTGTCGATAGCAGATTGtggataaatactttttttcatcTTACTATCTGTGAAATACTAAAGACATTTAAAGACATGTAAAATGCGTTTTTTTTGGCACATttatacaaataaaatgttatctaGAATAAAAAATGTACCGCATTTATCAACAA
>XR_005041785.1
CATTCGCGCACTATGTCATGCACCTTGACCTATAGATGGGGGTTGAGTCGTCGCGTCGTCGCTTTTCGTTTGTAGCTTCCATCTGTCAAAGCATCATCGGAGCGGTCATTACTAATATTCAGTCGAGAGTAAAGTAACGTTTAGTGCCTTTTCTCATTGGCTTCTTTGGGTTATTGGATACAACTGGTCGCCAGAACGCATACAGCGACTATTTTTGGCTGACGAGTGCCACAAACGCATCACTTTAGCCAGGATGGAGTTAATATTGGACACCGCTAAGAGCCAGGGTCAGACCCAGAGCCAGGGGGGTCAgactgtctcccctccctcaatCTTCCCCTATCGCTTCACCTCGGACGGGCGTCTGTGTCACCGGGTCACCCAGGAGCCCTTCATGTTCCAGCGGAGCTGTGACCCAGACGCCGCAAAGAGAGAGGACCAGGCCTTATGTCTCCACATCACCCAACACGTTCACTCTCTCCTGGAGGAGCAGCTGCACCTCTTCAGGCTCTACCTCCCACCCCTCAGCAAAGAggtctacctccctcctccaccccacaGCAAGGGggtctacctccctcctccatctctcagcAAGGGggtctacctccctcctccaccagagCCTCAGGGGGACCACAGGGTCTACTTTAGCCCCCACCGAGGAGCCCCCAGCCAGGGCTACGTGTACCTCTCCCCTGGGGCCCTGGAGAGCCCTGCCACCCTGTTGGTGGTGGTCCAGGACCGGGGAACGATGCGCTGCGGGCTGTGGAGCTGGAGGGCTGCTGCCAGCCGAGGTCTGGAAAGAGGCAGCATGATCCCCTACGTGAAGAGGGTCCTAGAAGAGGGCAGCTCTGTCCTCCTGATGAACCCCAACCAGGGAGGAGGTGTTGGGGAGACTCCGGAGGAGCACGTTCACCGTGTCTGGGACCTCCTGGTGTCGCGCTGCGTCTCCCGGCGTGTCGTCGTGGTAGCGCACGGTTATGGAGGCCTGGCGTTCGTGGACCTGCTGTGCCGACGCCCACAACAAGTGGTGGGGCAGGTGTGGGCGGCGGCCTTTCTGGACTCCTCCCACAGCCTGTGGCACCAGCAGTTGGACGCGGTGGGCCGGGAGTGGCTGAGGACACGCTCTAGGAGGTGGGTACTGAGCTCCAAGCCCCTGAACCAGCCGGTGGGGTCGCTGAAAGCAGGATGCCCTCAGATGTCAGCTGGGACACAGAGTCATGACGCGGCTCCATCTGTCTGCATGGAGTCTGTGTTCAGGTTCTTCTCCAAAACGCTGAGTCCTAAACCACCCACCACCTTCAGTATGGTGACCCGCAGCAGGGGCACAGTGGGACAGATCAGACCTCACAACGGGAGAGGCATCACCAGGCCTTATTGACAGCACCAGTGAAGTACAGGAGTACAGTGGGAATTGAGTATTTATCTTACGGTCAGAAAGACACGTGTCTAATTCACGCGAATACATTTTCCTGGACTCTGGATGAGgtcatcCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCCTCCTAAATATTTAGTGTAATTTTGTTAAGACACTCCAGGTCCTCCTAAAtatgtagtgtcattttgttaaGACACTCCAGGTCCTCCTAAATATTTAGTTTCATTGTGTTAAGACTCTCCAGGGTCGGACTTGTCGATAGCAGATTGtggataaatactttttttcatcTTACTATCTGTGAAATACTAAAGACATTTAAAGACATGTAAAATGCGTTTTTTTTGGCACATttatacaaataaaatgttatctaGAATAAAAAATGTACCGCATTTATCAACAA
>XM_036972371.1
GGAGCCCCGGGACCAGCGGAAGCATCCGGAGCCCCGGGACCAGCGGAAGCATCCGGAGCCCCGGGACCAGCGGAAGCAGAACAgcccccataacatcaaagatccagcACCATATTCCACAGATGGAGTTAATATTGGACACCGCTAAGAGCCAGGGTCAGACCCAGAGCCAGGGGGGTCAgactgtctcccctccctcaatCTTCCCCTATCGCTTCACCTCGGACGGGCGTCTGTGTCACCGGGTCACCCAGGAGCCCTTCATGTTCCAGCGGAGCTGTGACCCAGACGCCGCAAAGAGAGAGGACCAGGCCTTATGTCTCCACATCACCCAACACGTTCACTCTCTCCTGGAGGAGCAGCTGCACCTCTTCAGGCTCTACCTCCCACCCCTCAGCAAAGAggtctacctccctcctccaccccacaGCAAGGGggtctacctccctcctccatctctcagcAAGGGggtctacctccctcctccaccagagCCTCAGGGGGACCACAGGGTCTACTTTAGCCCCCACCGAGGAGCCCCCAGCCAGGGCTACGTGTACCTCTCCCCTGGGGCCCTGGAGAGCCCTGCCACCCTGTTGGTGGTGGTCCAGGACCGGGGAACGATGCGCTGCGGGCTGTGGAGCTGGAGGGCTGCTGCCAGCCGAGGTCTGGAAAGAGGCAGCATGATCCCCTACGTGAAGAGGGTCCTAGAAGAGGGCAGCTCTGTCCTCCTGATGAACCCCAACCAGGGAGGAGGTGTTGGGGAGACTCCGGAGGAGCACGTTCACCGTGTCTGGGACCTCCTGGTGTCGCGCTGCGTCTCCCGGCGTGTCGTCGTGGTAGCGCACGGTTATGGAGGCCTGGCGTTCGTGGACCTGCTGTGCCGACGCCCACAACAAGTGGTGGGGCAGGTGTGGGCGGCGGCCTTTCTGGACTCCTCCCACAGCCTGTGGCACCAGCAGTTGGACGCGGTGGGCCGGGAGTGGCTGAGGACACGCTCTAGGAGGTGGGTACTGAGCTCCAAGCCCCTGAACCAGCCGGTGGGGTCGCTGAAAGCAGGATGCCCTCAGATGTCAGCTGGGACACAGAGTCATGACGCGGCTCCATCTGTCTGCATGGAGTCTGTGTTCAGGTTCTTCTCCAAAACGCTGAGTCCTAAACCACCCACCACCTTCAGTATGGTGACCCGCAGCAGGGGCACAGTGGGACAGATCAGACCTCACAACGGGAGAGGCATCACCAGGCCTTATTGACAGCACCAGTGGGACAGATCAGACCTCACAAGGGGAGAGGCATCACCAGGCCTTATTGACAGCACCAGTGGGACAGATCAGACCTCACAACGGGAGAGGCATCACCAGGCCTTACTGACAGCACCAGTG

Function

NR:

description
protein FAM172A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972370.1 False 1513 mRNA 0.59 3 811487 817121
XM_036972372.1 False 2073 mRNA 0.51 4 811487 817841
XR_005041785.1 False 2031 mRNA 0.52 5 811487 817841
XM_036972371.1 True 1382 mRNA 0.62 3 812539 817121

Neighbor

gene id symbol gene type direction distance location
LOC110495334 LOC106575937 coding upstream 42700 762579 ~ 768787 (+)
LOC118947129 NA coding upstream 215150 595503 ~ 596337 (+)
LOC118947131 LOC103365236 coding upstream 506246 107069 ~ 305241 (+)
LOC118947137 NA coding downstream 127611 945293 ~ 946912 (+)
tpp2 tpp2 coding downstream 161752 979593 ~ 1046298 (+)
blzf1 LOC106575890 coding downstream 384196 1202037 ~ 1209051 (+)
pibf1 pibf1 coding downstream 398236 1216077 ~ 1301282 (+)
klf5a LOC106593200 coding downstream 488150 1305991 ~ 1333394 (+)
G2339875 NA non-coding upstream 13888 793735 ~ 797599 (+)
G2339859 NA non-coding upstream 56414 753948 ~ 755073 (+)
G2339858 NA non-coding upstream 57803 751848 ~ 753684 (+)
G2339848 NA non-coding upstream 64751 734293 ~ 746736 (+)
G2339853 NA non-coding upstream 67934 742159 ~ 743553 (+)
G2339891 pros1 non-coding downstream 7287 825128 ~ 826439 (+)
G2339896 NA non-coding downstream 13964 831805 ~ 832307 (+)
G2339869 pros1 non-coding downstream 17107 834948 ~ 838462 (+)
G2339899 NA non-coding downstream 23665 841506 ~ 843332 (+)
G2339902 NA non-coding downstream 29036 846877 ~ 848091 (+)
G2339795 NA other upstream 125939 683344 ~ 685548 (+)
G2339478 NA other upstream 347020 463198 ~ 464467 (+)
G2339343 NA other upstream 713631 97115 ~ 97856 (+)
G2339912 NA other downstream 53266 870947 ~ 900840 (+)
G2339955 NA other downstream 154638 972479 ~ 972783 (+)
G2340118 NA other downstream 299102 1116943 ~ 1118969 (+)

Expression


Co-expression Network