LOC118947137


Basic Information

Item Value
gene id LOC118947137
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 945293 ~ 946912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041788.1
tgacagtacagtagactacagtagactagTCTTATTGTAAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactagtcCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactagtcCTATTGTAGGTAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGTAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactaaTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGTAGGTTATAGGTTCTA
>TU2679136
TATTGTTGGTAGGTTATGGGTTCTAGTGAGGTTGGTGAtaatacagtagactacagcagaCTAGTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGTAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtacactagtCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactagtcCTATTGTAGAGAGGTTATAGGTTATTTCTGTAACATTTGAACTCTTGTTGAGTCGTTGTTTATCTGTCTAGTGGTTTGACAACCTGCTGCTTATCAGACATATGGAATGCTGCCATGTCAGTCCTgcaatcatcacacacacacacacacacacacacacacacac
>TU2679137
TATTGTTGGTAGGTTATGGGTTCTAGTGAGGTTGGTGAtaatacagtagactacagcagaCTAGTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGGTGATAATACAGTAGACTAGTCCTATTGTAGGTAGGTTATAGGTTCTAGAGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGTAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGAGAGGTTATAGGCTCTAGTGGGGTTGgtgacagtacagtagactacagtagactagTCCAATTGTAGGGAGGTTATAGGTTATTTCTGTAACATTTGAACTCTTGTTGAGTCGTTGTTTATCTGTCTAGTGGTTTATCTGACTCACGTTGGGTCGTTGTTTATCTGTCTAGTGGTTTGACAACCTGCTGCTTATCAGACATATGGAATGCTGCCATGTCAGTCCTgcaatcatcacacacacacacacacacacacacacacacac
>TU2679138
TATTGTTGGTAGGTTATGGGTTCTAGTGAGGTTGGTGAtaatacagtagactacagcagaCTAGTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGGTGACAGTACAATAGACTAGTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGCTCTAGTGGGGTTGgtgacagtacagtagactacagtagactagTCCAATTGTAGGGAGGTTATAGGTTATTTCTGTAACATTTGAACTCTTGTTGAGTCGTTGTTTATCTGTCTAGTGGTTTATCTGACTCACGTTGGGTCGTTGTTTATCTGTCTAGTGGTTTGACAACCTGCTGCTTATCAGACATATGGAATGCTGCCATGTCAGTCCTgcaatcatcacacacacacacacacacacacacacacacac
>TU2679139
TATTGTTGGTAGGTTATGGGTTCTAGTGAGGTTGGTGAtaatacagtagactacagcagaCTAGTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGGTGATAATACAGTAGACTAGTCCTATTGTAGGTAGGTTATAGGTTCTAGAGAGGTTGgtgacagtacagtagactacagtagactagTCTTATTGTAAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactagtcCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGTAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCAATTGTAGGGAGGTTATAGGTTATTTCTGTAACATTTGAACTCTTGTTGAGTCGTTGTTTATCTGTCTAGTGGTTTGACAACCTGCTGCTTATCAGACATATGGAATGCTGCCATGTCAGTCCTgcaatcatcacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041788.1 False 430 mRNA 0.42 3 945452 946013
TU2679136 False 624 lncRNA 0.42 6 945293 946912
TU2679137 False 715 lncRNA 0.43 5 945293 946912
TU2679138 False 532 lncRNA 0.43 4 945293 946912
TU2679139 True 682 lncRNA 0.42 6 945293 946912

Neighbor

gene id symbol gene type direction distance location
si:ch73-41e3.7 NA coding upstream 127611 811487 ~ 817841 (+)
LOC110495334 LOC106575937 coding upstream 176665 762579 ~ 768787 (+)
LOC118947129 NA coding upstream 349115 595503 ~ 596337 (+)
LOC118947131 LOC103365236 coding upstream 640211 107069 ~ 305241 (+)
tpp2 tpp2 coding downstream 33580 979593 ~ 1046298 (+)
blzf1 LOC106575890 coding downstream 256024 1202037 ~ 1209051 (+)
pibf1 pibf1 coding downstream 270064 1216077 ~ 1301282 (+)
klf5a LOC106593200 coding downstream 359978 1305991 ~ 1333394 (+)
LOC118947132 NA coding downstream 407914 1353782 ~ 1354415 (+)
G2339940 NA non-coding upstream 13457 931131 ~ 931995 (+)
G2339933 NA non-coding upstream 33196 911803 ~ 912256 (+)
G2339926 NA non-coding upstream 40616 902593 ~ 904836 (+)
G2339912 NA non-coding upstream 44612 870947 ~ 900840 (+)
G2339913 NA non-coding upstream 46270 898335 ~ 899182 (+)
G2339958 NA non-coding downstream 8547 954560 ~ 954846 (+)
G2339960 NA non-coding downstream 25189 971202 ~ 971435 (+)
G2339962 NA non-coding downstream 32226 978239 ~ 978444 (+)
G2339966 NA non-coding downstream 44463 990476 ~ 991728 (+)
G2339968 NA non-coding downstream 60617 1006630 ~ 1008051 (+)
G2339795 NA other upstream 259904 683344 ~ 685548 (+)
G2339478 NA other upstream 480985 463198 ~ 464467 (+)
G2339343 NA other upstream 847596 97115 ~ 97856 (+)
G2339955 NA other downstream 26466 972479 ~ 972783 (+)
G2340118 NA other downstream 170930 1116943 ~ 1118969 (+)
G2339911 NA non-coding upstream 52166 891240 ~ 893127 (+)

Expression


Co-expression Network