G2339858


Basic Information

Item Value
gene id G2339858
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 751848 ~ 753684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2678980
ctgtatatcctcataacatggttaaaataGTAATGTtggtatcatggatggtcagtctttgTATCCACAGCTCTGTCTAGTCATCTGAGAGTAGTTATTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTACACCTTAATACAGCCATCTATTGGAAGATAACAGCCTGGATTCTCCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGGATTCTCCTGTCTCTATACCTTAGTACAGCCATCTATTGGCCATGGAAGGTAACCGCCTGGATTCTCCTGTCTCTACACCTTAATACAGCCATCTATTGGAAGATAACAGCCTGGATTCTCCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGACTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTACACC
>TU2678981
ctgtatatcctcataacatggttaaaataGTAATGTtggtatcatggatggtcagtctttgTATCCACAGCTCTGTCTAGTCATCTGAGAGTAGTTATTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTACACCTTAATACAGCCATCTATTGGAAGgtaactgtctgtctctacacctTAATACAGCCATCTATTGGAAGGTAACAGCCTGAATTATCCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAA
>TU2678985
ctgtatatcctcataacatggttaaaataGTAATGTtggtatcatggatggtcagtctttgTATCCACAGCTCTGTCTAGTCATCTGAGAGTAGTTATTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTACACCTTAATACAGCCATCTATTGGAAGgtaactgtctgtctctacacctTAATACAGCCATCTATTGGAAGGTAACAGCCTGTCTCTACACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGCCTGTCTCTACACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAAGGTAACAGTCTGTCTCTATACCTTAATACAGCCATCTATTGGCCATGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2678980 False 575 lncRNA 0.43 4 751848 753104
TU2678981 False 523 lncRNA 0.41 3 751848 753684
TU2678985 True 557 lncRNA 0.41 5 751848 753684

Neighbor

gene id symbol gene type direction distance location
LOC118947129 NA coding upstream 155511 595503 ~ 596337 (+)
LOC118947131 LOC103365236 coding upstream 446607 107069 ~ 305241 (+)
LOC110495334 LOC106575937 coding downstream 8895 762579 ~ 768787 (+)
si:ch73-41e3.7 NA coding downstream 57803 811487 ~ 817841 (+)
LOC118947137 NA coding downstream 191768 945293 ~ 946912 (+)
tpp2 tpp2 coding downstream 225909 979593 ~ 1046298 (+)
blzf1 LOC106575890 coding downstream 448353 1202037 ~ 1209051 (+)
G2339848 NA non-coding upstream 5112 734293 ~ 746736 (+)
G2339853 NA non-coding upstream 8295 742159 ~ 743553 (+)
G2339847 NA non-coding upstream 17570 734077 ~ 734278 (+)
G2339843 NA non-coding upstream 24305 727320 ~ 727543 (+)
G2339823 NA non-coding upstream 41002 709123 ~ 710846 (+)
G2339859 NA non-coding downstream 264 753948 ~ 755073 (+)
G2339875 NA non-coding downstream 40051 793735 ~ 797599 (+)
G2339891 pros1 non-coding downstream 71444 825128 ~ 826439 (+)
G2339896 NA non-coding downstream 78121 831805 ~ 832307 (+)
G2339869 pros1 non-coding downstream 81264 834948 ~ 838462 (+)
G2339795 NA other upstream 66300 683344 ~ 685548 (+)
G2339478 NA other upstream 287381 463198 ~ 464467 (+)
G2339343 NA other upstream 653992 97115 ~ 97856 (+)
G2339912 NA other downstream 117423 870947 ~ 900840 (+)
G2339955 NA other downstream 218795 972479 ~ 972783 (+)
G2340118 NA other downstream 363259 1116943 ~ 1118969 (+)
pibf1 pibf1 other downstream 526211 1216077 ~ 1301282 (+)

Expression


Co-expression Network