G2340105


Basic Information

Item Value
gene id G2340105
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1067928 ~ 1092799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2679406
tgaccatacaAACTGAAACAAGACAGCGAAGTGCATACATTTTAATATTAATATCAACTATCTAAGTACGTGTGTAAAAACAAAGTAAACAATAAAGCACTATATATAGTAGATCATTTGAAAGTAGAAatcaaacatcaacaacaacatcagtAGTCCATCAACGTCCATTATCATTAGCCAAGATGGCCGCCTTCTGTCTTCAAGCATTTCTCAGAGGAAGAAGAAAAGACTCTTGGTTACAGTCGGCAGGATGTCGACAGTAGTTCCTCAGCCTTCTTTCCACAATTCCTACCTTTTACATGTGGCCTTGAAGATCTTAacctctcccatctcagccagcaGGGTGGTGTTGAAGGtgatcctctgtctctctgcatgtGGCCTTGAAGATCTTAacctctcccatctcagccagcaGGGTGGTGTTGAAGGtggtcctctgtctctctacatgtgGCCTTGAAGATCTTAacctctcccatctcagccaGGAGGGTGGTGTTGAAGGTGTTCTTGAAGTCCTCAGTGAATACCAGGTCTGTGGGAAAGCGGACCTTGTTGGCCCAGATCAGAGTGGTTCCTAAGGGAAATAAAATGAGTTGTTTAAGGCTTTCATGTCTTACTTTCTGGGATTT
>TU2679407
tgaccatacaAACTGAAACAAGACAGCGAAGTGCATACATTTTAATATTAATATCAACTATCTAAGTACGTGTGTAAAAACAAAGTAAACAATAAAGCACTATATATAGTAGATCATTTGAAAGTAGAAatcaaacatcaacaacaacatcagtAGTCCATCAACGTCCATTATCATTAGCCAAGATGGCCGCCTTCTGTCTTCAAGCATTTCTCAGAGGAAGAAGAAAAGACTCTTGGTTACAGTCGGCAGGATGTCGACAGTAGTTCCTCAGCCTTCTTTCCACAATTCCTACCTTTTACATGTGGCCTTGAAGATCTTAacctctcccatctcagccagcaGGGTGGTGTTGAAGGtgatcctctgtctctctgcatgtGGCCTTGAAGATCTTAacctctcccatctcagccagcaGGGTGGTGTTGAAGGTGTTCTTGAAGTCCTCAGTGAATACCAGGTCTGTGGGAAAGCGGACCTTGTTGGCCCAGATCAGAGTGGTTCCTAAGGGAAATAAAATGAGTTGTTTAAGGCTTTCATGTCTTACTTTCTGGGATTT
>TU2679411
AGGAAAGACATTCAATGTAATAAATGTTTTGATATGTTTAAGGCAGCAAAACGTCAACGTGTAGACTTTTACTAGAAACTTTATATATccaaaacaaattatatttgaaTACAGAATGGAACAAGACAGCAAAGTACATACTTTTATAATATTATCAATACAAACTACATGTAACAACTAAGTACTAGAAAGTACTAGAAAGTAACAATAAAGTACTAGATATAGCAGGTAAGTATTGAGTAGAACATCAAACATCAACAACTGACATCATCCGTAGTCCATCCACATCCATTATCATTAGCCAAGATATCCGCCTTCTGTCTTCAAGCATTTCTCAGAGGAAGAAGGGACAGGACGTCTTGGTTACATTTAGCATAGTCTGCAGGATGTTAACTAGTCCTTTGTCTTCCCTAATCCCTACCTTTTACACATGGGCATAAACCTCTCCCATCTCAACCAGCAGGGTGGTGTTGAAGGtgatcctctgtctctctgcatgtGGCCTTGAAGATCTTAacctctcccatctcagccagcaGGGTGGTGTTGAAGGTGTTCTTGAAGTCCTCAGTGAATACCAGGTCTGTGGGAAAGCGGACCTTGTTGGCCCAGATCAGAGTGGTTCCTAAGGGAAATAAAATGAGTTGTTTAAGGCTTTCATGTCTTACTTTCTGGGATTT

Function

NR:

description
protein-lysine methyltransferase METTL21C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2679406 False 638 lncRNA 0.43 2 1067928 1092799
TU2679407 False 562 lncRNA 0.42 3 1067928 1092799
TU2679411 True 680 lncRNA 0.39 2 1092044 1092799

Neighbor

gene id symbol gene type direction distance location
tpp2 tpp2 coding upstream 21630 979593 ~ 1046298 (+)
LOC118947137 NA coding upstream 121915 945293 ~ 946912 (+)
si:ch73-41e3.7 NA coding upstream 250087 811487 ~ 817841 (+)
LOC110495334 LOC106575937 coding upstream 299141 762579 ~ 768787 (+)
LOC118947129 NA coding upstream 471591 595503 ~ 596337 (+)
blzf1 LOC106575890 coding downstream 109238 1202037 ~ 1209051 (+)
pibf1 pibf1 coding downstream 123278 1216077 ~ 1301282 (+)
klf5a LOC106593200 coding downstream 213192 1305991 ~ 1333394 (+)
LOC118947132 NA coding downstream 261128 1353782 ~ 1354415 (+)
lmo7b LOC106575016 coding downstream 287469 1380268 ~ 1427883 (+)
G2340101 NA non-coding upstream 6238 1061365 ~ 1061690 (+)
G2339977 NA non-coding upstream 28860 1038538 ~ 1039068 (+)
G2339974 NA non-coding upstream 33403 1032212 ~ 1034525 (+)
G2339972 NA non-coding upstream 48223 1017549 ~ 1019705 (+)
G2339968 NA non-coding upstream 59877 1006630 ~ 1008051 (+)
G2340113 NA non-coding downstream 7238 1100037 ~ 1100972 (+)
G2340118 NA non-coding downstream 24144 1116943 ~ 1118969 (+)
G2340119 NA non-coding downstream 26677 1119476 ~ 1124849 (+)
G2340121 NA non-coding downstream 29000 1121799 ~ 1123838 (+)
G2340123 NA non-coding downstream 33496 1126295 ~ 1128695 (+)
G2339955 NA other upstream 95145 972479 ~ 972783 (+)
G2339912 NA other upstream 194089 870947 ~ 900840 (+)
G2339795 NA other upstream 382380 683344 ~ 685548 (+)
G2339478 NA other upstream 603461 463198 ~ 464467 (+)
G2339343 NA other upstream 970072 97115 ~ 97856 (+)

Expression


Co-expression Network