G2340162 (ercc5)


Basic Information

Item Value
gene id G2340162
gene name ercc5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1172453 ~ 1172907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2679531
GTGTTGAGCTGTTTGATAACAGGATGTAGAGTCTCTTCTGTCTTCCTGCTGTTCCAACCAAAACGACTCTCACAGAACTCCTTGAGGAGGTCGAGGTGTGGGCGGCCCCAGCTAAAGGAGCTTTCTGATAGGTCGACGCTGGGCTGCAGGTAGGCAGTTGCCACGGCAGGGTTGGGGAAGCCCGGCCGCAGCCGAAGCCCTCTCAGTTTCCTCTTGACCTTGGAGTCAcgggggtcagaggtcagacgttGCTGCTGCTGGGCCAAG

Function

symbol description
ercc5 Predicted to enable endodeoxyribonuclease activity and single-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair, DNA incision, 3'-to lesion. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in cerebrooculofacioskeletal syndrome 3; melanoma; and xeroderma pigmentosum group G. Orthologous to human ERCC5 (ERCC excision repair 5, endonuclease).

NR:

description
DNA repair protein complementing XP-G cells homolog, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2679531 True 267 lncRNA 0.58 2 1172453 1172907

Neighbor

gene id symbol gene type direction distance location
tpp2 tpp2 coding upstream 126155 979593 ~ 1046298 (+)
LOC118947137 NA coding upstream 226440 945293 ~ 946912 (+)
si:ch73-41e3.7 NA coding upstream 354612 811487 ~ 817841 (+)
LOC110495334 LOC106575937 coding upstream 403666 762579 ~ 768787 (+)
LOC118947129 NA coding upstream 576116 595503 ~ 596337 (+)
blzf1 LOC106575890 coding downstream 29130 1202037 ~ 1209051 (+)
pibf1 pibf1 coding downstream 43170 1216077 ~ 1301282 (+)
klf5a LOC106593200 coding downstream 133084 1305991 ~ 1333394 (+)
LOC118947132 NA coding downstream 181020 1353782 ~ 1354415 (+)
lmo7b LOC106575016 coding downstream 207361 1380268 ~ 1427883 (+)
G2340157 NA non-coding upstream 12596 1159106 ~ 1159857 (+)
G2340128 NA non-coding upstream 25438 1146688 ~ 1147015 (+)
G2340126 NA non-coding upstream 36111 1136013 ~ 1136342 (+)
G2340125 NA non-coding upstream 40172 1131780 ~ 1132281 (+)
G2340123 NA non-coding upstream 43758 1126295 ~ 1128695 (+)
G2340165 NA non-coding downstream 25587 1198494 ~ 1199135 (+)
G2340171 NA non-coding downstream 31226 1204133 ~ 1205065 (+)
G2340150 NA non-coding downstream 36390 1209297 ~ 1209995 (+)
G2340160 NA non-coding downstream 37258 1210165 ~ 1210650 (+)
G2340179 NA non-coding downstream 69567 1242474 ~ 1255859 (+)
G2340118 NA other upstream 53484 1116943 ~ 1118969 (+)
G2339955 NA other upstream 199670 972479 ~ 972783 (+)
G2339912 NA other upstream 298614 870947 ~ 900840 (+)
G2339795 NA other upstream 486905 683344 ~ 685548 (+)
G2339478 NA other upstream 707986 463198 ~ 464467 (+)

Expression


Co-expression Network