G2340150


Basic Information

Item Value
gene id G2340150
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1209297 ~ 1209995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2679501
ggaaaacctggttcagtctgctttccaccagacactgggagatgagttcacctttcagcaagacaataaactagaacacaaggccaaaatctacactggagttgcttaccaagaagacagtgaatgttcctgagtggacgAGTTACTGCTGACCTAAATCTACTTCACAATCTatgtcaagacctgaaaatagttgagtagcaatgatcaacaaccaatttgaagaattttgaaaataataaatgggcaaatgttgcacaattcaggtgtggaaagctcttaagagatttacccagaaagcctagcagctttaatcgctgccaaaggtgcttataCAAAGTATTGACCATTAAGGTTTTcacttttgtcattatggagtattgtgtgtagatgggtgagaattatTCACGCTCTggcaaattggttgttgatcattgctagacagccatttttttttttaggtctttccatagatgttcaagtagatttaagtctaaACTATCTAGTCAGGAACATCCACTGTCTCGGTCGCAACTCTAGTGTAGATTTGATCTTGTGTTTAAGGTGTGAATACATGAGATATTTCAGCTCATTTATTTTTTCAACAcgtttgctaaaatttctaaacacattttcaccttgtcattatggagtattgtgtgtagatgggtgagataaaaaaatatatataaaaattga
>TU2679502
ggaaaacctggttcagtctgctttccaccagacactgggagatgagttcacctttcagcaagacaataaactagaacacaaggccaaaatctacactggagttgcttaccaagaagacagtgaatgttcctgagtggacgAGTTACTGCTGACCTAAATCTACTTCACAATCTatgtcaagacctgaaaatagttgagtagcaatgatcaacaaccaatttgaagaattttgaaaataataaatgggcaaatgttgcacaattcaggtgtggaaagctcttaagagatttacccagaaagcctagcagctttaatcgctgccaaaggtgcttataCAAAGTATTGACCATTAAGGTTTTcacttttgtcattatggagtattgtgtgtagatgggtgagaattatTCACGCTCTggcaaattggttgttgatcattgctagacagccatttttttttttaggtctttccatagatgttcaagtagatttaagtctaaACTATCTAGTCAGGAACATCCACTGTCTCGGTCGCAACTCTAGTGTAGATTTGATCTTGTGTTTAAGGTGTGAATACATGAGATATTTCAGCTCATTTATTTTTTCAACAcgtttgctaaaatttctaaacacattttcaccttgtcattatggagtattgtgtgtaga

Function

NR:

description
transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2679501 False 699 lncRNA 0.36 1 1209297 1209995
TU2679502 True 666 lncRNA 0.37 1 1209297 1209962

Neighbor

gene id symbol gene type direction distance location
blzf1 LOC106575890 coding upstream 623 1202037 ~ 1209051 (+)
tpp2 tpp2 coding upstream 162999 979593 ~ 1046298 (+)
LOC118947137 NA coding upstream 263284 945293 ~ 946912 (+)
si:ch73-41e3.7 NA coding upstream 391456 811487 ~ 817841 (+)
LOC110495334 LOC106575937 coding upstream 440510 762579 ~ 768787 (+)
pibf1 pibf1 coding downstream 6082 1216077 ~ 1301282 (+)
klf5a LOC106593200 coding downstream 95996 1305991 ~ 1333394 (+)
LOC118947132 NA coding downstream 143932 1353782 ~ 1354415 (+)
lmo7b LOC106575016 coding downstream 170273 1380268 ~ 1427883 (+)
LOC110515241 LOC106575016 coding downstream 182368 1392363 ~ 1395554 (+)
G2340171 NA non-coding upstream 4232 1204133 ~ 1205065 (+)
G2340165 NA non-coding upstream 10162 1198494 ~ 1199135 (+)
G2340162 ercc5 non-coding upstream 36390 1172453 ~ 1172907 (+)
G2340157 NA non-coding upstream 49440 1159106 ~ 1159857 (+)
G2340128 NA non-coding upstream 62282 1146688 ~ 1147015 (+)
G2340160 NA non-coding downstream 170 1210165 ~ 1210650 (+)
G2340179 NA non-coding downstream 32479 1242474 ~ 1255859 (+)
G2340195 NA non-coding downstream 60340 1270335 ~ 1271557 (+)
G2340196 NA non-coding downstream 70101 1280096 ~ 1280993 (+)
G2340198 NA non-coding downstream 78448 1288443 ~ 1288976 (+)
G2340118 NA other upstream 90328 1116943 ~ 1118969 (+)
G2339955 NA other upstream 236514 972479 ~ 972783 (+)
G2339912 NA other upstream 335458 870947 ~ 900840 (+)
G2339795 NA other upstream 523749 683344 ~ 685548 (+)

Expression


Co-expression Network