G2340179


Basic Information

Item Value
gene id G2340179
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1242474 ~ 1255859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2679549
ggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagactttacagtgaaatgctgaatacaacaggtgtagtagccctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacatcacagtgaaatgctgaatacaacaggtgtagtagccctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctga
>TU2679550
ggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagactttacagtgaaatgctgaatacaacaggtgtagtagccctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacatcacagtgaaatgctgaatacaacaggtgtagtagccctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtaga
>TU2679552
acagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagccctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttccagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2679549 False 296 lncRNA 0.41 2 1242474 1245824
TU2679550 False 277 lncRNA 0.41 2 1242474 1249277
TU2679552 True 288 lncRNA 0.41 2 1252336 1255859

Neighbor

gene id symbol gene type direction distance location
blzf1 LOC106575890 coding upstream 33800 1202037 ~ 1209051 (+)
tpp2 tpp2 coding upstream 196176 979593 ~ 1046298 (+)
LOC118947137 NA coding upstream 296461 945293 ~ 946912 (+)
si:ch73-41e3.7 NA coding upstream 424633 811487 ~ 817841 (+)
LOC110495334 LOC106575937 coding upstream 473687 762579 ~ 768787 (+)
klf5a LOC106593200 coding downstream 50132 1305991 ~ 1333394 (+)
LOC118947132 NA coding downstream 98068 1353782 ~ 1354415 (+)
lmo7b LOC106575016 coding downstream 124409 1380268 ~ 1427883 (+)
LOC110515241 LOC106575016 coding downstream 136504 1392363 ~ 1395554 (+)
G2340160 NA non-coding upstream 31824 1210165 ~ 1210650 (+)
G2340150 NA non-coding upstream 32479 1209297 ~ 1209995 (+)
G2340171 NA non-coding upstream 37409 1204133 ~ 1205065 (+)
G2340165 NA non-coding upstream 43339 1198494 ~ 1199135 (+)
G2340162 ercc5 non-coding upstream 69567 1172453 ~ 1172907 (+)
G2340195 NA non-coding downstream 14476 1270335 ~ 1271557 (+)
G2340196 NA non-coding downstream 24237 1280096 ~ 1280993 (+)
G2340198 NA non-coding downstream 32584 1288443 ~ 1288976 (+)
G2340199 NA non-coding downstream 33943 1289802 ~ 1292166 (+)
G2340202 NA non-coding downstream 46341 1302200 ~ 1302756 (+)
G2340118 NA other upstream 123505 1116943 ~ 1118969 (+)
G2339955 NA other upstream 269691 972479 ~ 972783 (+)
G2339912 NA other upstream 368635 870947 ~ 900840 (+)
G2339795 NA other upstream 556926 683344 ~ 685548 (+)
pibf1 pibf1 other downstream 24036 1216077 ~ 1301282 (+)

Expression


Co-expression Network