G2340154


Basic Information

Item Value
gene id G2340154
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1336901 ~ 1338965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2679515
TGTATTTTCTAACAAAAGGAAGTGAAATGTTTTCTCCTACTCTGGGCAGAGTGGTGGGACATCCTACTTAGTATTGAATGTAATACAGAAGACCACATTGACTAGTATTCATGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCACGTCGTTTCATCCTAAGTATCTCTGTGGTCTTTGATCAATTTGTatatgtcccaaatgtcaccctatatagtgcactactttagaccagaaccctatagaccctattccctatatatagtgcactactttagaccagagccctatagaaccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagagccctatagaaccctattccctaatgtagtacactactttagaccagaaccctattccctatgtagtgcactactttagaccagagccctatagaaccctattccctatatagtacactactttagaccagaaccatattccctatatatagtgcactactttagatcagggccctatagaaccctattccctatatatagtgcactactttagatcagggccctatagaaccctattccctatatatagtgcactactttagaccagggccctatagaaccctattccctatatatatatagtgcactactttagtccagggcctgtagtagtgtactgtatagaGAAATAGGCTGCTAATGGATACTAGCTGATACTCTAATGAGAAGTCTTCCTGATATTTATTTAACGATACTTGGACAAGAGGGAATCCATCTTTTCCTCAGATCGGCCATTTTATTCTGTGTAACTGAAATGCCTTAATGTAAATACCTGCT
>TU2679516
TGTATTTTCTAACAAAAGGAAGTGAAATGTTTTCTCCTACTCTGGGCAGAGTGGTGGGACATCCTACTTAGTATTGAATGTAATACAGAAGACCACATTGACTAGTATTCATGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCACGTCGTTTCATCCTAAGTATCTCTGTGGTCTTTGATCAATTTGTatatgtcccaaatgtcaccctatatagtgcactactttagaccagaaccctatagaccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagagccctatagaaccctattccctaatgtagtacactactttagaccagaaccctattccctatgtagtgcactactttagaccagagccctatagaaccctattccctatatatagtgcactactttagaccagagccctatagaaccctattccctatatatagtgcactactttagaccagggccctatagaacccgattccctatatagtgcactactttagaccagggccctatagaaccctattccctatatatagtgcactactttagtccagggcctgtagtagtgtactgtatagaGAAATAGGCTGCTAATGGATACTAGCTGATACTCTAATGAGAAGTCTTCCTGATATTTATTTAACGATACTTGGACAAGAGGGAATCCATCTTTTCCTCAGATCGGCCATTTTATTCTGTGTAACTGAAATGCCTTAATGTAAATACCTGCTCTGTAAATAAcgttttgatttaaaaaatgttttgtttatttgctcttattttgtattttttttaaaacaaaaggGCAGAACTTACAAAATGTCCGGCATCGATGCTGTGTGATTTTCTTTgtttattttaaaatattttgatGATGGTTTTGTTTTTATATTTGTAATTTGAACCTATTTTCTAGTTTCCCTTTTGGTAGAAATGAAACAAATAAATCCTAATCAAATAAAATCTTGTTGTCCATTTTTGTCTTTTACATTTTGTTGTCAtgattgaaatgtatttttactgcgaGGGTCCAACGTAGCAGACAAAGTAAGACTCTTATCCTGGCGGGTTCCCCCAATAAGTTTCTCTTGTCATCTTTTCATGCCCAAGGGTTTCCCTAAACCTCTCGTCTACCATATGTTTACGTAGCAGGAAGTGCCTCGGCTCAGCACGTTAACATGTCTGTTACCAGTTGAGTTTAGGAGTTGAACCTGTTGTGCTGGTTTGACAGGTGTCTTACTAGGATCTTGGCTCAACTTGTTATTGTCATACCACAGATCACAAGAGAGATCTTAGCGATTTAAGAAGAGATTCGGTATCCTTTGAAAAATAGATTGAAAACATGattgtgttttaaaaaaaaaagattttaaagATAGTCTTTGGCTCGTTATACCATGTTTTAATGTGACGCAAAGAGGAAGAGCCATTCCTCAGGTGAGATCTGATAACTGACTGACGTGTTCTGGAATGTTTATTATGAATCTATAAATCATTCTAGAAGCGTTTTATTCATCTGATTCAGGAGACCGAAGACTGGCTTGGTTCCAGAGGATCATTCCAGAAGCTTTACTGTGAAACATTTACCTACTGGACACCATTCCAGTTTGTCAGCCCAGTTGTCTAACCCCTCCTAGCTAGTTTTATGAACTCCCTTCACCACATG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2679515 False 936 lncRNA 0.40 2 1336901 1338030
TU2679516 True 1779 lncRNA 0.38 3 1336901 1338965

Neighbor

gene id symbol gene type direction distance location
klf5a LOC106593200 coding upstream 3507 1305991 ~ 1333394 (+)
pibf1 pibf1 coding upstream 35619 1216077 ~ 1301282 (+)
blzf1 LOC106575890 coding upstream 128227 1202037 ~ 1209051 (+)
tpp2 tpp2 coding upstream 290603 979593 ~ 1046298 (+)
LOC118947137 NA coding upstream 390888 945293 ~ 946912 (+)
LOC118947132 NA coding downstream 14962 1353782 ~ 1354415 (+)
lmo7b LOC106575016 coding downstream 41303 1380268 ~ 1427883 (+)
LOC110515241 LOC106575016 coding downstream 53398 1392363 ~ 1395554 (+)
G2340209 NA non-coding upstream 10039 1325169 ~ 1326862 (+)
G2340203 NA non-coding upstream 33089 1303383 ~ 1303812 (+)
G2340202 NA non-coding upstream 34145 1302200 ~ 1302756 (+)
G2340199 NA non-coding upstream 44735 1289802 ~ 1292166 (+)
G2340198 NA non-coding upstream 47925 1288443 ~ 1288976 (+)
G2340213 NA non-coding downstream 165 1339130 ~ 1339338 (+)
G2340222 NA non-coding downstream 18187 1357152 ~ 1357588 (+)
G2340219 NA non-coding downstream 21528 1360493 ~ 1361588 (+)
G2340118 NA other upstream 217932 1116943 ~ 1118969 (+)
G2339955 NA other upstream 364118 972479 ~ 972783 (+)
G2339912 NA other upstream 463062 870947 ~ 900840 (+)

Expression


Co-expression Network