XLOC_000045 (slc5a3a)


Basic Information

Item Value
gene id XLOC_000045
gene name slc5a3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2025085 ~ 2027100 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000081
ATGGCATCAACAATGGAAGCAGCGGATATCATTGTCGTTGCCATGTACTTCGTTCTTGTCCTGTGCTTCGGCTTTTTTTCGATGTGGAGGGCGAATCGAGGTACCGTGAGTGGATATTTCCTAGCCGGTCGCTCCATGAACTGGTTTGTGATCGGTGCATCACTGTTTGTGAGTAACATCGGCAGTGAGCATTTCATCGGTCTCGCTGGGTCTGGCGCAGCTAGCGGCTTAGCCGTCGGAGCTTGGGAATTTAATGCAATTCTCCTGCTACAGCTCCTGGGCTGGGTCTTCATACCCGTCTACATCCACTCTGGAGTCTACACAATGCCAGAATATCTCTCGAAAAGATTTGGCGGCAATCGGTTGAAGATCTACTTCGCATCGCTCACTCTCCTCCTCTACATTTTCACCAAGCTCTCAGTGGATCTTTATTCGGGAGCGCTTTTCATCCAGGAGTCTCTAGGCTGGAATCTTTACCTGTCTATAATCCTGCTGATCACCTTGACTGCTCTTCTCACGGTCACTGGCGGTCTGGTGGCGGTCATCTACACGGATACTCTTCAGGCGTTCCTGATGATATCAGGAGCACTGTGTCTGATGGCTATCAGCTTAGTTAAAGTCGGGGGTCTTGAGGGATTGCGCACCAAATACATGAACGCTCTTCCCAacatcacatttataacactggAGAATAATTTAACCTACTCAAATTCCTGCCATGTGAATCCCAAAGCAGATTCATTTAAGCTTTTGAGGAGTCCATTGGATAAGGACTTGCCTTGGCCTGCTTTTCTTCTTGGTCAAACTCCGGCTTCCATCTGGTATTGGTGCGCCGATCAGGTCATAGTCCAAAGAGTCTTAGCAGCACGAAATATTGCCCACGCCAAAGGGTCAACCTTGCTAGCAGGAGTCCTAAAAGTCCTCCCGATGTTCATCATCGTGATTCCAGGAATGATTTCACGCGTGCTTTTTGCTGATGAGCTTGCATGCATTGGTCCAGAGCATTGCATGCAAGTGTGCAACAGTAGAGCCGGTTGCACCAACACGGCGTATCCTCGACTGGTCATGAACATCATGCCTGTGGGTCTTCGAGGATTGATGATGGCAGTGATGTTGGCGGCTCTAATGAGCGATCTAGACTCAATCTTTAACAGCGCCAGTACTATCTTCACCCTTGATATTTATAAGATGATCCGTCACCAGGCTTCCTCTAAGGAGCTCATGGTTGTGGGTCGCCTCTTTGTGGTGCTTATAGTAGCTATAAGCATTGCTTGGGTGCCGTTTGTCATTGAGATGCAAGGAGGTCAGATGTTCCTGTACATTCAGGAGGTGTCTGATTACCTCACGCCTCCCATCGCTGCACTATTCCTGCTGGGAGTGCTCTGGAAGCGCTGCAATGAGACCGGTGCATTCTGGGGCGGCTTTGTAGGATTGATTTTAGGAATTGTAAGACTGATTCTGGCATTCGTCTATAGAGAGCCGGATTGCGACTCAGTTGATGACCGTCCGGCTTTCATTAAGGATGTTCATTTCATGTAtgttgctgctgttttgttttgggtttCAGGATTTGTGATGGTGGTTGTCAGTCTTTGCACCAATCCACCAAGTAAAGAACAGATTTCCAAGACTACTTTGTGGGGACTGCGCAACAGGAATCAACCTGCAGACACGAAAGCGAAAGGAGGGAATGGCAAACTCGAGCAGACATTGGATGGAGTGGAATTTCAACCATTGCCTCCTGAAATGCTTCCAAATGGCCACTTGGAGGCTCCTCATACCCACAGACAGGCCACTGAGCATGCAGCCAGAAATAAGGGACGCTGTGTGAAATGTTTGGGGTGGTTTTGTGGTTATAATGAACATTCAGAGGAATCTGATTCACCGTTTGAGGATGATGGCAGGAGTGTTCATGAAATGCTTAAAGAATctgcacaaaacaaaactgctCTTAACATTGGGCTCCTGTTGGTGTGCGCACTAGGAATCttcttatatgtttatttttctttgtaa

Function

symbol description
slc5a3a Predicted to enable glucose:sodium symporter activity. Predicted to be involved in inositol metabolic process and myo-inositol transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A3 (solute carrier family 5 member 3).

GO:

id name namespace
GO:0015798 myo-inositol transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006020 inositol metabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005412 glucose molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-3 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in inositol metabolic process and myo-inositol transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A3 (solute carrier family 5 member 3).

Ensembl:

ensembl_id ENSDARG00000010376

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000081 True 2016 mRNA 0.48 1 2025085 2027100

Neighbor

gene id symbol gene type direction distance location
XLOC_000044 NA coding upstream 1440 2023409 ~ 2023645 (+)
XLOC_000043 NA coding upstream 19453 2001716 ~ 2005632 (+)
XLOC_000042 si:ch211-132g1.7 coding upstream 24728 1941031 ~ 2000357 (+)
XLOC_000041 si:ch211-132g1.1 coding upstream 101832 1915967 ~ 1923253 (+)
XLOC_000040 si:ch211-132g1.4 coding upstream 113704 1904419 ~ 1911381 (+)
XLOC_000046 mbnl2 coding downstream 74441 2101541 ~ 2217861 (+)
XLOC_000047 rap2ab coding downstream 195263 2222363 ~ 2240119 (+)
XLOC_000048 kpnb3 coding downstream 233307 2260407 ~ 2299553 (+)
XLOC_000049 CR352215.1 coding downstream 248505 2275605 ~ 2275742 (+)
XLOC_000050 farp1 coding downstream 274858 2301958 ~ 2444210 (+)
XLOC_000034 NA non-coding upstream 405771 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 446834 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 664254 1358731 ~ 1360831 (+)
XLOC_000051 CR352215.2 non-coding downstream 376003 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 1691566 3718666 ~ 3720603 (+)
XLOC_000054 CABZ01063288.1 non-coding downstream 1732824 3759924 ~ 3760034 (+)
XLOC_000056 FO744838.1 non-coding downstream 2570960 4598060 ~ 4680477 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_00151569_00153623 SLC5A3A coding CI01000299 null 151519 ~ 154472 (+)
bowfin (Amia calva) AMCG00014796 NA coding CM030128.1 CM030128.1 31469559 ~ 31471622 (-)