LOC120567073 (sos1)


Basic Information

Item Value
gene id LOC120567073
gene name sos1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2995029 ~ 3080190 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1307
CCCCGACACAGCGTCCCTAAACTTCCCCCCAAGACGTACAAGAGGGAGTCTCTGAGCCACGCTCCGCCGCTGCTGGACACGCCCCCCGCGCTGGAGGAGGCAGGGCTCTGAGCTGATTGGACAAGCTGGAGGGGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGTACAGGCTGGAGGGGGCCGGGCTCTGAGCTGATTGTACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGGAGGAGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGGAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGAAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGGAGGAGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGTTTGGACAACTGATTGGATCAGAACACACAGAAAAACTCTGATCCAGTCTGGACTGAGAAAACTAAAGATCATGTGCTCTTATTGTGAAAACCCAACTGCTTGTTTCCTGCGGAGCGTTGGAGaacattggtgtgtgtgtgtgtgtgtgggtgggtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtttgtctgtcagcgTGTCGGACCGCGCTGTGTGGAGCAGAGAGGATTGTGGGAACAGAACCAGAGAGGTACTGTGCTGGTTCTGTTGCTCTCTGATGTTCAAGGAGATAAATTCTTTAAAACAAGGGAATAAACGTGTTTGTAAACCGAGCTGGATGGACAACAAACAGCGcgcc
>TU1308
CCCCGACACAGCGTCCCTAAACTTCCCCCCAAGACGTACAAGAGGGAGTCTCTGAGCCACGCTCCGCCGCTGCTGGACACGCCCCCCGCGCTGGAGGAGGCAGGGCTCTGAGCTGATTGGACAAGCTGGAGGGGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGTACAGGCTGGAGGGGCCGGGCTCTGAGCTGATTGTACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCTGGCTCTGAGCTGATTGGAGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGAAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGGAGGAGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGGAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGAAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGGAGGAGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGTTTGGACAACTGATTGGATCAGAACACACAGAAAAACTCTGATCCAGTCTGGACTGAGAAAACTAAAGATCATGTGCTCTTATTGTGAAAACCCAACTGCTTGTTTCCTGCGGAGCGTTGGAGaacattggtgtgtgtgtgtgtgtgtgggtgggtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtttgtctgtcagcgTGTCGGACCGCGCTGTGTGGAGCAGAGAGGATTGTGGGAACAGAACCAGAGAGGTACTGTGCTGGTTCTGTTGCTCTCTGATGTTCAAGGAGATAAATTCTTTAAAACAAGGGAATAAACGTGTTTGTAAACCGAGCTGGATGGACAACAAACAGCGcgcc
>TU1309
CCCCGACACAGCGTCCCTAAACTTCCCCCCAAGACGTACAAGAGGGAGTCTCTGAGCCACGCTCCGCCGCTGCTGGACACGCCCCCCGCGCTGGAGGAGGCAGGGCTCTGAGCTGATTGGACAAGCTGGAGGGGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGGAGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGAAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCCGGGCTCTGAGCTGATTGTACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGGAGGAGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGGAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGAAGGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGGAGGAGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGTTTGGACAACTGATTGGATCAGAACACACAGAAAAACTCTGATCCAGTCTGGACTGAGAAAACTAAAGATCATGTGCTCTTATTGTGAAAACCCAACTGCTTGTTTCCTGCGGAGCGTTGGAGaacattggtgtgtgtgtgtgtgtgtgggtgggtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtttgtctgtcagcgTGTCGGACCGCGCTGTGTGGAGCAGAGAGGATTGTGGGAACAGAACCAGAGAGGTACTGTGCTGGTTCTGTTGCTCTCTGATGTTCAAGGAGATAAATTCTTTAAAACAAGGGAATAAACGTGTTTGTAAACCGAGCTGGATGGACAACAAACAGCGcgcc
>XM_039813872.1
AAAGCGGTGAACTGTGCGTGTCGGTCCCGCAGCAGCAGCCATGCAGGCGGCCCAGCTGCAGTACGACTTCTTCAGCGAGGAGAATGGCCCGAAGTGGAGAGGCCTGCTGGTGTCCTCACTGGAGaaggtacTGAACCAGGTGCATCCTAACCTGGTGTCCCAGCAGGAGGCGCTGCAGTACATCGAGGAGCTGATCCTGCTGCTGCTCAGCATGCTGTGTCAGGCTCAGCCTCGCACTGTACAGGATGtggagGAGCGCGTGCAGAAGAGTTTTCCTCACCCGATCGATAAGTGGGCGATCGCTGACGCTCAGGCTGCCAtcgagaagaggaagaggaggaaccCTCTGGCCCTGCCCGTAGACAAGATCCACCCGCTACTCAAGGAGGTGCTGGGCTATAAGATCGACCACCAGGTGTCTGTCTACATGGTGGCCGTGTTGGAGTACATCTCTGCTGACATCCTCAAACTGGCAGGAAACTACGTCAGGAACATTCGGCACTACGAGATCTCGCAGCAGGACATCACCGTGGCCATGTGTGCTGAcaagGTGCTGATGGACATGTTCCACCAGGATGAGGAAGACATCAGTGGCTTCCCTCTGATGGACGAGGAGCCGTCAGCCAATGAGGAGCAGAGTTACTACGAGCTGGTGCGGAGCTTCATGTCTGAGGGCCGCCAGTACCTGAGAACTCTCAACCTGCTGATCAAGGTGTTCAGAGagccaatcagctgcagccacaGGCTCTTCTCCCAGCACgatGTGGACAGTATCTTTAGCCGGATCGTAGATATCCATgaggtgacggtgaagctgttGGGTCTGATCGAGGACACGGTGGAGATGACGGACGAAGGGAGTCCTCATCCTCTGGTGGGGAGCTGCTTCGAGGACCTGGCGGAGGAGTTGGCCTTTGACCCTTATGAGACGTACGCTCAGGACACCCTGCGCTCTGGTTTCCATGAACACTTCCTGAGTCAGGTGTCCAAACCGGGAGCTGCCTTCCACCTGCAGTCCATCTGTGAAGGTTTTAAAGAAGCTGTTCAGTACGTTCTGCCCAGACTGCTGCTCACTCCTGTTTACCACTGTCTGCACCTCTTCGAGATCCTCAAGCAACTGGAGGAGAAGAGTGAGGATGAGGAGGACAAAGAGTGTCTGAAACAGGCCATCACCGCTCTGCTCAACCTGCAGAGCAGCATAGAGAGGATCTGCTCCCGCAGCCTGGCTAAGAGGAGGCTCAGCGAGTCCGCGTGCCGTTTCTACAGCCACCAGATGAAGGGGAAGCACCTGGCCATCAGGAAGATGAACGAGATCCAGAAGAACATCGACGGCTGGGAGGGGAAGGACATCGGCCAGTGCTGCAATGAGTTCATCATGGAGGGTACGCTGACGCGCGTCGGCGCCAAGCACGAGCGCCACATCTTCCTGTTCGACGGCCTGATGATCTGCTGCAAGTCCAACCACGGGCCGCCGCGGCTGCCCGGCGCCGGCTCGGCCGCCGAGTACCGCCTCAAAGAGAAGTTCTTCATGCGCAAAGTCCAGATCAATGACAAAGATGACAAGGAGGGAGAGTACCGCCACGCCTTTGAGATTATCCTGAAGGACGGCAACAGCGTGGTGTTCGCCGCCAAGTCTGCCGAGGAGAAGAGCGGCTGGATGGCGGCGCTGATCTCACTGCAGTACCGCAGCACGCTGGAGCGCATGCTGGACTCGGCCATGCTGCAGGAGGACAAGGAGCAAACGGTGAGGCTGCCCGGCGCCGAGCTGTACCGCTTCGCCCAGCCCGACTCCGAGCAGAACGTCGTGTTCGAGGACAGCGTCCAATCCAAGTCTGGGATCCCCATCGTCAAGGCCGGGACGGTGCTGAAGCTGATCGAGAGACTCACCTTCCACATGTACGCAGACCCAAACTTTGTGCGAACGTTTCTGACGACATACCGGTCCTTCTGTAAACCTCAGGAGCTGCTGGACCTGCTCATGGAGAGgtttgaGATCCCAGAGCCGCGGCCCAGCGAGGCGGAtcagatggagggaggagagcagCCGATCAGCGCAGAACTCAAACGCTTCCGCAAAGAGTTCGTCCAGCCGGTCCAGCTCCGAGTGCTAAACGTGTGTCGTCACTGGGTGGAGCATCACTTCTACGACTTTGAGAGAGACGCTCACCTGCTGAGACGCCTGGAGGAGTTCATCGCCTCCGTCAGAGGTAAAGCGATGAGGAAGTGGGTAGAGTCGATCACTAAGATCATCCAGAGGAAGAAGCAGGTTCAGGTGAGCGTGGCAAGCCACAGCATCACCTTCCAGAACGCTCCGCCTCCCTTCGAGTGGCACATCTGCAAACCAGGAGGCAGCGAGGCCTTCGACCTGATGACGCTGCACCCCATCGAGGTCGGCCGCCAGCTCACGCTGCTCGAGTCCGACTTCTACAGGGCGGTGCAGCCGTCAGAGCTGGTCGGCAGCGTCTGGACCAAAGAGGATAAAGAGATCCACTCTCCCAACCTGCTGAGGATGATCCGGCACACTACCAACCTCACGCTGTGGCTCGAGAAGTGTATCGTAGAAACCGAGAACCTGGAAGAACGAGTCGCCGTGGTGTCTCGGATCATCGAGATCCTGCAGGTTTTTCAGGAACTTAACAACTTTAACGGCGTTCTAGAGGTCGTCAGCGCCATGAACTCATCTCCGGTCTACAGACTGGACCACACCTTCGAGCAAATCCCGAGTCGTCAGAGAAAGATCCTGGAGGAAGCTCACGAGCTGAGTGAAGATCACTACAAGAAGTATTTAGCCAAGCTGCGCTCCATCAATCCCCCCTGTGTGCCCTTCTTTGGAATCTACCTGACCAACATCCTGAAGACGGAGGAGGGTAACCCCGACTTCCTGCGCCGACACGGCAAAGAACTGATCAACTTCAGCAAGAGAAGGAAAGTGGCCGAGATCACCGGAGAGATCCAACAGTACCAGAACCAGCCATACTGCCTGAGGGTGGAGGGAGACATCAGGAAGTTCTTTGAGAACCTGAACCCAATGGAGGACATGTCGGAGAAAGACTTTGCTGATCATCTGTTCAACAAATCTCTGGAGATTGAACCTCGAAACGCCCGGTCCTTACCTCGATTTGTGAAGAGGTACACGTGTCCTCTGAAGTCTCCGGGGATCCGTCCGACCTCGGCGAGGCCCGGGACCATGCGCCACCCGACGCCGCTGCAGAACGAGCCCAGGAAGATCAGCTAcagccgcatcccggacagcgaGGCAGAGGGGGGGGCTGTCTCCGCCCCCAACTCCCCCCGCACCCCGCTGACTCCGCCCCCAGCCTCAGCCGCCTCCAGCTCCACAGACGTAGGCAGCGTGTTCGACTCGCCGCAGGCTCCCAGCAGCCCCTTCCACTCCACCTGCGAAAGTATCTTCTCTGTTCCTCACGGGCCACGGTCGTCCTCGGTCTCCTCCATGGTGAGTTTCAGTCGGGCTTCTGAGGACGTTCAGGttcctcctcctgttcctcCTCGCAGGCGTCCAGAGTCGGCTCCCGCTGAGTCCTCGCCCTCAAAGaTGATGTCACAGTTGGACAGCCCCCCTGCCGTCCCCCCTCGCCAGCCCACCTGTAAGCTCCTCCCCCCTCGTTACTCCTCGTCCctgtcctcctccccccccGACAGTCCCCCCTCGCTGCCTCCTCGGGAACCCGTCAGCTCTCCTCTGCACCTTCTGCCCCCCCCTCAGGGCCGCCCCCCCCACTGTGACCTGCAGGCCTtcttcccctcctccccccctctgccCCCTCCAACACCcatcacccccacccccccatccAGAAAGACAACCCTCCCTCTCCTGCCCCTGGACGGCCCCCCCGTGCCCCCCCGACACAGCGTCCCTAAACTTCCCCCCAAGACGTACAAGAGGGAGTCTCTGAGCCACGCTCCGCCGCTGCTGGACACGCCCCCCGCGCTGGAGGAGGCAGGGCTCTGAGCTGATTGGACAAGCTGGAGGGGGCCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCAAGGCTCTGAGCTGATTGTACAGGCTGGAGGGGCCGGGCTCTGAGCTGATTGTACAGGCTGGAGGGGGCGGGCTCTGAGCTGATTGGACAGGCTGGAGGGGGCTGGCTCTGAGCTGATTGGAGGGGCAAGGCTCTGAGCTGATTGGACAGGCTGAAGGGGGCAAGGCTCTGAGCTGATTGGAGGC

Function

symbol description
sos1 Predicted to enable DNA binding activity; guanyl-nucleotide exchange factor activity; and protein heterodimerization activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be part of nucleosome. Human ortholog(s) of this gene implicated in Noonan syndrome; Noonan syndrome 4; and gingival fibromatosis. Orthologous to human SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1).

NR:

description
PREDICTED: son of sevenless homolog 1

GO: NA

KEGG:

id description
K03099 SOS; son of sevenless

RNA

RNA id representative length rna type GC content exon number start site end site
TU1307 False 888 lncRNA 0.41 2 3079048 3080190
TU1308 False 946 lncRNA 0.48 2 3079048 3080190
TU1309 False 948 lncRNA 0.43 3 3079048 3080190
XM_039813872.1 True 4252 mRNA 0.60 24 2995029 3079437

Neighbor

gene id symbol gene type direction distance location
tmem178 tmem178a,LOC102307988 coding upstream 17600 2938097 ~ 2977429 (+)
eif4a3 eif4a3 coding upstream 104024 2882923 ~ 2891005 (+)
LOC120561808 srf,LOC103372093 coding upstream 113909 2858504 ~ 2881120 (+)
LOC120566159 NA coding upstream 410767 2572980 ~ 2584262 (+)
LOC120561353 LOC102083160 coding upstream 600742 2362732 ~ 2394287 (+)
LOC120557776 NA coding downstream 29401 3109591 ~ 3128050 (+)
LOC120557788 LOC100703858,LOC102778772,LOC103375691,LOC101465362,LOC107082671 coding downstream 77013 3157203 ~ 3159292 (+)
LOC120550686 LOC106676715 coding downstream 284626 3364816 ~ 3373141 (+)
rrbp1b NA coding downstream 333235 3413425 ~ 3448493 (+)
LOC120555395 NA coding downstream 408153 3488343 ~ 3490010 (+)
G969 NA non-coding upstream 2457 2992217 ~ 2992572 (+)
G960 NA non-coding upstream 3359 2983259 ~ 2991670 (+)
G968 NA non-coding upstream 5430 2988953 ~ 2989599 (+)
G953 NA non-coding upstream 12313 2980433 ~ 2982716 (+)
G956 NA non-coding upstream 54057 2940691 ~ 2940972 (+)
G959 NA non-coding downstream 2041 3082231 ~ 3083136 (+)
G1045 NA non-coding downstream 16172 3096362 ~ 3135361 (+)
G1093 NA non-coding downstream 190823 3271013 ~ 3272231 (+)
G1098 NA non-coding downstream 245425 3325615 ~ 3384416 (+)
LOC120551115 NA non-coding downstream 259305 3339495 ~ 3341743 (+)
G879 NA other upstream 294054 2626243 ~ 2700975 (+)
LOC120566146 LOC107082675,LOC108251143,LOC103383281 other upstream 424575 2558876 ~ 2570454 (+)
G714 LOC103375176,LOC105920176,LOC100706186,LOC101468385 other upstream 648981 2307285 ~ 2346048 (+)
LOC120566000 NA other upstream 1027774 1946145 ~ 1967255 (+)
G363 LOC104946033,LOC104961227 other upstream 1115483 1593822 ~ 1879546 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other downstream 47899 3128089 ~ 3157138 (+)
dzank1 NA other downstream 95411 3175601 ~ 3259758 (+)
LOC120555387 LOC106675676,LOC106675675 other downstream 387934 3468124 ~ 3480130 (+)
G1191 NA other downstream 416416 3496606 ~ 3499104 (+)
LOC120562910 NA other downstream 712556 3792746 ~ 3814570 (+)

Expression


Co-expression Network