G1079


Basic Information

Item Value
gene id G1079
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3160950 ~ 3161871 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1452
ccatttttttattcatataatttactgaaatcaaacaGTTCTGCACCTTCAGTGCTAACAGTACAGCATTCATGTTAGTCATTCTGTGGACCATAATGAGACAGGAAGCTTCAAAgtaaaacagcttttttttaaggaaagcAAATGGACTGACACAGTGCCTCCATGAAGGCTGTGAGGTCCGTTCCAGTCAATCCCATACTCTTCAGGAACCGGAATGGATGACAAGCATAATCAATCTTGTACTTAAAACTAGTTTGACATGTCATTACACAAGATTGTTATTTTTGGTCACCAAGTCAGTGAGAAATTAAAtgttcgttattaaattcagttTTGTAAAATAATACAGCTGTGCATAGTATGCACTGTAGAACCTACAGCTCATAGCTTGATCTTTGAAAACTCGGGAGACTTTACAGAGACAATctataatacatttttcatttaaagtaCCACATTTAGCACAATATAAAAACTGGATTCAGTGTTCCCTGATCTTCCAATGAAGTGAAGATCTGATAGAAGAGGTCCAGGGCATGTTCATAAACATATCTCCACATCCTCTCTATTCTGTGTTTAGGATAAAATTGACAATTGTTAATTTATGTGACATATGCTAAAGTACATTCAACTGGTACGTTAGTTGTGTGAGCCTAGTTGCCAAACACATTTCTTTACCGTTGATTGTGGACACTTCTGCCTGTGATGTGTGAATTCCGGTCGGTACCTTTGCTTCTGATCAGGAATTCTGCTACATCTGCATTCTTCCCCACTTTATCAGACCGTACCCTTGATGGCAGCCCATACTGTTCAACAGCGGCAATAAAGCTCTGTTAGACCATATAAGCTCTATTATTGCCAGCCAGAGTCAGGTAGACCACTAAACGACTGAATCCATCCACCCCACCATGGACAACAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU1452 True 922 lncRNA 0.55 1 3160950 3161871

Neighbor

gene id symbol gene type direction distance location
gemin6 NA coding downstream 53672 3099669 ~ 3107278 (-)
soul4 NA coding downstream 249419 2901146 ~ 2911531 (-)
LOC120566216 NA coding downstream 363798 2738444 ~ 2797152 (-)
LOC120566206 NA coding downstream 427672 2716457 ~ 2733278 (-)
zgc:110222 LOC103372080,LOC100694267 coding downstream 467307 2689977 ~ 2693643 (-)
LOC120550828 NA coding upstream 117555 3279426 ~ 3286257 (-)
LOC120550893 NA coding upstream 189475 3351346 ~ 3382291 (-)
kat14 NA coding upstream 221660 3383531 ~ 3399979 (-)
trnak-uuu NA coding upstream 265079 3426950 ~ 3427022 (-)
srd5a2a NA coding upstream 505042 3666913 ~ 3682870 (-)
G1065 NA non-coding downstream 58907 3101707 ~ 3102043 (-)
G1041 NA non-coding downstream 75100 3085634 ~ 3085850 (-)
G1039 NA non-coding downstream 78988 3081747 ~ 3081962 (-)
G1028 NA non-coding downstream 120039 3040584 ~ 3040911 (-)
G1013 NA non-coding downstream 165412 2994110 ~ 2995538 (-)
G1104 NA non-coding upstream 13495 3175366 ~ 3185505 (-)
LOC120551073 NA non-coding upstream 112630 3274501 ~ 3278176 (-)
LOC120551207 NA non-coding upstream 151179 3313050 ~ 3324222 (-)
LOC120551162 NA non-coding upstream 181496 3343367 ~ 3345941 (-)
LOC120551253 NA non-coding upstream 224379 3386250 ~ 3387744 (-)
G1008 tmem178a,LOC102307988 other downstream 182835 2975238 ~ 2978115 (-)
G1003 tmem178a other downstream 196630 2963740 ~ 2964320 (-)
G974 NA other downstream 301648 2858496 ~ 2859302 (-)
G670 LOC103370005,LOC106529077 other downstream 1110566 2049069 ~ 2050384 (-)
LOC120566421 NA other downstream 1411258 1733546 ~ 1749692 (-)
LOC120550954 NA other upstream 70753 3232624 ~ 3241497 (-)
LOC120550734 LOC106675350 other upstream 107651 3269522 ~ 3274443 (-)
LOC120551010 NA other upstream 143598 3305469 ~ 3313049 (-)
LOC120551303 NA other upstream 246950 3408821 ~ 3410295 (-)
LOC120555401 tmem63a,LOC106529083,LOC106934241,LOC103130112,LOC106936753,LOC102796925 other upstream 333016 3494887 ~ 3648473 (-)

Expression


Co-expression Network