LOC120550734 (LOC106675350)


Basic Information

Item Value
gene id LOC120550734
gene name LOC106675350
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3269522 ~ 3274443 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1500
CCTTTATTTGTTTAAAGCAATATATTTGACTAGCAGCAAGTGTGTGGAGGTCAAAATATGTTCAAGACAATAAAAATGTCAGTGAAGGACATCTGAGATTTTGTTGCAGTGGTTTTCTGATGCATGTGTTTAAGGTTTAAGGGTGGTGACACAGCTAAGACCCGAGAGTCTCTTTCAAGACACTGAATTTGAGCAGAAACCATAAGGATACTCAAAGGACCTGTGACTCTCAGGAAATGCATCAAATGAGAGTGACAGGTGAAACAGTTTCAAGACAATGGCAGGAAAAGCATGCTGAAGATTGAATCAAACCTTGGCTGGAAATATTTGAAGGGATCTAGCCAGTCCTCAATGAAAGCTTCGTTGCCCCCCTGTGAGTCTTCTGGCAGAAATGATGGCGCCTGTATTCTTTGGTTTCCCTAAACATCACACCCTGTTTATACGAGGCTCTTCAATTAAGTCTGCACCCAAAGATTCAATAAGAGAGGGGATCCTGCCAGTCCAAAGTGAACTCCTGATGGACATTGAAGTACTCCTGCAGAGCTTGTATCTTCGACACCATGCGCATTAGAAACTCCACTGAGTGCTTTCCTTCACCAAGGCAGGACCCAGTGACTCATTACTGTTGATCGGTCAGGGGCAGGTCattttttgtttcatgtttATTCATTCCTCCATGGATTACCAGCCATATATATGGACACATGCTGTATTCTCAAGATCTATGCTGTTTGGTAGGAATAGAGAAAATTATATGTTTAGTCTGTTTTCAAATGGTATGTCAAAATTTCTCATTGTTTATCAGTAATATTCACTACCTTGGTTATATATGGGCATCTTTAGATTTTTCTATATTTAGCGgttgcaaatgtaaaatgtacgGTAAACTATTTATGTTCCTcatattgtactgtatttttagCGGTAAAATACCGGCAGCTGTGGTTGCCAGGAATTTACCGTAAAATGTATCTGgtcaaaataaaatgctgtaA
>XM_039787542.1
CCCTCACCCAGTCCAATATATTCTCTAGACTGGGTAGATAAATTTAGAATTCCATGTGAAGATTTTCCAGAAGACTTGATCCAGTGtcttcagagagagaaaagaccaAAGCCTCGATTGCGGAGGGAGATGATCCGCATCATTGTGAAGGAGATGATGAAAGCTTGTGCCTCTCCAACTAGAAGAGCCTCGACTGAAATTGCAAAAAAACTGGTTGTGATGTATCCCAAGTCACTGCAGGATGTCATCGCGGGGGATGTGGTAGGACAGGGGTACCACTCTTTGGTAAAACAGATTCAGGCACGAATTGAAAATGTGAAGAGGTCTACTTCACCAGTGTTACAGAAGCGCAAACTGGGAGGATCAGATGACACCGATGAAGTCACCCCTGAAAAGCGAGCATCTGTTCAAGACACATATGGCTGCATAAAGTGGGACATGAAGTTTTTGCCAGTCACTGAGACACTGGAAACCCAGAAGGAGAAGATGGAACGTATGAAGATTCTCAGTGAACAGACAAGCTTCAGTCATGAAGAAGTAAAAACTCTAATGAAATGCACTTACTACTCTCAGCGCAAAGCAATAAATAGCGGAGCAGACATGCAAACCATCATAGAAGAGTGGCCTTTTTTGTTTCAGGCGATTGGAATGACAGTCCACTTTGAAGAACTTACTGGGGTACCGCTGAAAGAGACTTTTCTCACCAGTCTGGAAAAGAAGGGAAAACGGCTTCTGGactttctgaaaaacacttGTGCAGACAAGAGCAAGCGTGTCTTGGAGGCTGTCATAAAGCTTCGAATGCAGAGGGGACAGCTGAAGGGCTGCTCAGAAGACGTGAAAGATATGAtgctcctccttctctcctatTTCGATGAAAAAGAGGAGACCCTCTTCCACTATGTTGATGAAACATGTCTGGCAAAAGAAGTCCATGTGGAAAGCCTGCCTGTGACACCATGTATCATTGTTTGTGGATCCTCCTGCTTTGCATCGAGACTGTTCATGCTCAGCATTGACCACAAAGTCGTGAATGACCAAATAACTGACTTCATCTCTGCAATCTGTCTGATGCTTGGTAGCTACTACTGCCTGAACATCCACTATCCACTGGAACTTGGCTCCACACTTGAATTCCTTCAGAGGTTTAAGGGTGGTGACACAGCTAAGACCCGAGAGTCTCTTTCAAGGTTAGTAAAGTAAACAGATTCTAGAAGATATTTTACACATTTCTCTGTTGTCTCTAAatcttattttgtctttattatgattaaaaaggtttgttttgttCCTGCCCTTTTCAGACACTGAATTTGAGCAGAAACCATAAGGATACTCAAAGGACCTGTGACTCTCAGGAAATGCATCAAATGAGAGTGACAGGTGAAACAGTTTCAAGACAATGGCAGGAAAAGCATGCTGAAGATTGAATCAAACCTTGGCTGGAAATATTTGAAGGGATCTAGCCAGTCCTCAATGAAAGCTTCGTTGCCCCCCTGTGAGTCTTCTGGCAGAAATGATGGCGCCTGTATTCTTTGGTTTCCCTAAACATCACACCCTGTTTATACGAGGCTCTTCAATTAAGTCTGCACCCAAAGATTCAATAAGAGAGGGGATCCTGCCAGTCCAAAGTGAACTCCTGATGGACATTGAAGTACTCCTGCAGAGCTTGTATCTTCGACACCATGCGCATTAGAAACTCCACTGAGTGCTTTCCTTCACCAAGGCAGGACCCAGTGACTCATTACTGTTGATCGGTCAGGGGCAGGTCattttttgtttcatgtttATTCATTCCTCCATGGATTACCAGCCATATATATGGACACATGCTGTATTCTCAAGATCTATGCTGTTTGGTAGGAATAGAGAAAATTATATGTTTAGTCTGTTTTCAAATGGTATGTCAAAATTTCTCATTGTTTATCAGTAATATTCACTACCTTGGTTATATATGGGCATCTTTAGATTTTTCTATATTTAGCGgttgcaaatgtaaaatgtacgGTAAACTATTTATGTTCCTcatattgtactgtatttttagCGGTAAAATACCGGCAGCTGTGGTTGCCAGGAATTTACCGTAAAATGTATCTGgtcaaaataaaatgctgtaATTTGTTA
>XM_039787625.1
CCCTCACCCAGTCCAATATATTCTCTAGACTGGGTAGATAAATTTAGAATTCCATGTGAAGATTTTCCAGAAGACTTGATCCAGTGtcttcagagagagaaaagaccaAAGCCTCGATTGCGGAGGGAGATGATCCGCATCATTGTGAAGGAGATGATGAAAGCTTGTGCCTCTCCAACTAGAAGAGCCTCGACTGAAATTGCAAAAAAACTGGTTGTGATGTATCCCAAGTCACTGCAGGATGTCATCGCGGGGGATGTGGTAGGACAGGGGTACCACTCTTTGGTAAAACAGATTCAGGCACGAATTGAAAATGTGAAGAGGTCTACTTCACCAGTGTTACAGAAGCGCAAACTGGGAGGATCAGATGACACCGATGAAGTCACCCCTGAAAAGCGAGCATCTGTTCAAGACACATATGGCTGCATAAAGTGGGACATGAAGTTTTTGCCAGTCACTGAGACACTGGAAACCCAGAAGGAGAAGATGGAACGTATGAAGATTCTCAGTGAACAGACAAGCTTCAGTCATGAAGAAGTAAAAACTCTAATGAAATGCACTTACTACTCTCAGCGCAAAGCAATAAATAGCGGAGCAGACATGCAAACCATCATAGAAGAGTGGCCTTTTTTGTTTCAGGCGATTGGAATGACAGTCCACTTTGAAGAACTTACTGGGGTACCGCTGAAAGAGACTTTTCTCACCAGTCTGGAAAAGAAGGGAAAACGGCTTCTGGactttctgaaaaacacttGTGCAGACAAGAGCAAGCGTGTCTTGGAGGCTGTCATAAAGCTTCGAATGCAGAGGGGACAGCTGAAGGGCTGCTCAGAAGACGTGAAAGATATGAtgctcctccttctctcctatTTCGATGAAAAAGAGGAGACCCTCTTCCACTATGTTGATGAAACATGTCTGGCAAAAGAAGTCCATGTGGAAAGCCTGCCTGTGACACCATGTATCATTGTTTGTGGATCCTCCTGCTTTGCATCGAGACTGTTCATGCTCAGCATTGACCACAAAGTCGTGAATGACCAAATAACTGACTTCATCTCTGCAATCTGTCTGATGCTTGGTAGCTACTACTGCCTGAACATCCACTATCCACTGGAACTTGGCTCCACACTTGAATTCCTTCAGAGGTTTAAGGGTGGTGACACAGCTAAGACCCGAGAGTCTCTTTCAAGACACTGAATTTGAGCAGAAACCATAAGGATACTCAAAGGACCTGTGACTCTCAGGAAATGCATCAAATGAGAGTGACAGGTGAAACAGTTTCAAGACAATGGCAGGAAAAGCATGCTGAAGATTGAATCAAACCTTGGCTGGAAATATTTGAAGGGATCTAGCCAGTCCTCAATGAAAGCTTCGTTGCCCCCCTGTGAGTCTTCTGGCAGAAATGATGGCGCCTGTATTCTTTGGTTTCCCTAAACATCACACCCTGTTTATACGAGGCTCTTCAATTAAGTCTGCACCCAAAGATTCAATAAGAGAGGGGATCCTGCCAGTCCAAAGTGAACTCCTGATGGACATTGAAGTACTCCTGCAGAGCTTGTATCTTCGACACCATGCGCATTAGAAACTCCACTGAGTGCTTTCCTTCACCAAGGCAGGACCCAGTGACTCATTACTGTTGATCGGTCAGGGGCAGGTCattttttgtttcatgtttATTCATTCCTCCATGGATTACCAGCCATATATATGGACACATGCTGTATTCTCAAGATCTATGCTGTTTGGTAGGAATAGAGAAAATTATATGTTTAGTCTGTTTTCAAATGGTATGTCAAAATTTCTCATTGTTTATCAGTAATATTCACTACCTTGGTTATATATGGGCATCTTTAGATTTTTCTATATTTAGCGgttgcaaatgtaaaatgtacgGTAAACTATTTATGTTCCTcatattgtactgtatttttagCGGTAAAATACCGGCAGCTGTGGTTGCCAGGAATTTACCGTAAAATGTATCTGgtcaaaataaaatgctgtaATTTGTTA

Function

NR:

description
uncharacterized protein LOC106675350

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1500 False 995 lncRNA 0.35 5 3269529 3272235
XM_039787542.1 True 2127 mRNA 0.42 6 3269522 3274443
XM_039787625.1 False 2013 mRNA 0.43 7 3269522 3274443

Neighbor

gene id symbol gene type direction distance location
gemin6 NA coding downstream 162244 3099669 ~ 3107278 (-)
soul4 NA coding downstream 357991 2901146 ~ 2911531 (-)
LOC120566216 NA coding downstream 472370 2738444 ~ 2797152 (-)
LOC120566206 NA coding downstream 536244 2716457 ~ 2733278 (-)
zgc:110222 LOC103372080,LOC100694267 coding downstream 575879 2689977 ~ 2693643 (-)
LOC120550828 NA coding upstream 4983 3279426 ~ 3286257 (-)
LOC120550893 NA coding upstream 76903 3351346 ~ 3382291 (-)
kat14 NA coding upstream 109088 3383531 ~ 3399979 (-)
trnak-uuu NA coding upstream 152507 3426950 ~ 3427022 (-)
srd5a2a NA coding upstream 392470 3666913 ~ 3682870 (-)
G1104 NA non-coding downstream 84017 3175366 ~ 3185505 (-)
G1079 NA non-coding downstream 107651 3160950 ~ 3161871 (-)
G1065 NA non-coding downstream 167479 3101707 ~ 3102043 (-)
G1041 NA non-coding downstream 183672 3085634 ~ 3085850 (-)
G1039 NA non-coding downstream 187560 3081747 ~ 3081962 (-)
LOC120551073 NA non-coding upstream 58 3274501 ~ 3278176 (-)
LOC120551207 NA non-coding upstream 38607 3313050 ~ 3324222 (-)
LOC120551162 NA non-coding upstream 68924 3343367 ~ 3345941 (-)
LOC120551253 NA non-coding upstream 111807 3386250 ~ 3387744 (-)
G1149 NA non-coding upstream 133321 3407764 ~ 3407971 (-)
LOC120550954 NA other downstream 28025 3232624 ~ 3241497 (-)
G1008 tmem178a,LOC102307988 other downstream 291407 2975238 ~ 2978115 (-)
G1003 tmem178a other downstream 305202 2963740 ~ 2964320 (-)
G974 NA other downstream 410220 2858496 ~ 2859302 (-)
G670 LOC103370005,LOC106529077 other downstream 1219138 2049069 ~ 2050384 (-)
LOC120551010 NA other upstream 31026 3305469 ~ 3313049 (-)
LOC120551303 NA other upstream 134378 3408821 ~ 3410295 (-)
LOC120555401 tmem63a,LOC106529083,LOC106934241,LOC103130112,LOC106936753,LOC102796925 other upstream 220444 3494887 ~ 3648473 (-)
G1240 NA other upstream 306775 3581218 ~ 3648230 (-)
G1242 NA other upstream 374245 3648688 ~ 3672538 (-)

Expression


Co-expression Network