LOC120551073


Basic Information

Item Value
gene id LOC120551073
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3274501 ~ 3278176 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1514
tgttttctggtAGCAACATTGTGCAGTATGAGCGAACCATTTCACCCAAAAAAGGGAAGCAAGGCAAGACGTGGCTGCAGCGGTCTGCAGACGTGACTTCTGATCAAACCTCCTCCTAAACAAACAAAGAGCGACATTACATTGCGGGATGACGGCACCTGAAAATGACGCTGCTGAGCTGTGTGCCgcgcgctttttttttttcttgcaggaGACTTGTTGGCTTCGCAAACGGACGCAGTTTTGAACTCGTATTGGCGCCATTTTTAGCTGCTTGGACCACAGCATCTTCGGAATTTGTAGACATCCTGGCAGCTTACAATTAATTCGAGGTGAGGGTGCTGACCCAAATCTGTGTGGACCAGAACGTACCAAAGAGAACTACAACTCTGCTGTTGATCGCCTCCAGATTGACAATACACCAGACGTCGAAGGAGTGAagttcagACATCTCGGAAATGGGGGACAGCATAAGAAGTTCCATTACTAAGGTGCTGCCGGACCTGTCTGCCTCAATCCTTGAAATTGTACTGGAGGCACTACAATCATTAGGAGTGGAGACATCTGAGGACTTGCAGTTCATCAGTGAGACTGATCTGAACTCTGTCCTGAGACCAGTTCAGGCAAGAAAACTGCTGGCTGCCTGGAAACAAACCAGTAAGTATTATGATTTCATTG
>XR_005637822.1
TGTCTTACTGTGCAGGGAGAAAGATTTTAAAGAGTTTGGTCATGCTAATGTGTTCTCTGAATTACTAACAGACTTGAAAGAATTGGAGGACAGTGGGATTGTTGCATCAGATGAAACTAGAGTCAAAGGAACTTTGTTTTGCATCGCTGGTGATAATCTGGGTTCTCACTGTATTGGTGGCTTCACTGAAAATTTTAGTTCTTCAAAGTACTTCTGCAGGTACTGCCTGATAACGAAATCTGAATTTCAGGGTGCTGACCCAAATCTGTGTGGACCAGAACGTACCAAAGAGAACTACAACTCTGCTGTTGATCGCCTCCAGATTGACAATACACCAGACGTCGAAGGAGTGAagttcagACATCTCGGAAATGGGGGACAGCATAAGAAGTTCCATTACTAAGGTGCTGCCGGACCTGTCTGCCTCAATCCTTGAAATTGTACTGGAGGCACTACAATCATTAGGAGTGGAGACATCTGAGGACTTGCAGTTCATCAGTGAGACTGATCTGAACTCTGTCCTGAGACCAGTTCAGGCAAGAAAACTGCTGGCTGCCTGGAAACAAACCACACCAAATACGGGAC

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU1514 True 678 lncRNA 0.40 3 3274613 3278176
XR_005637822.1 False 585 lncRNA 0.44 3 3274501 3276424

Neighbor

gene id symbol gene type direction distance location
gemin6 NA coding downstream 167223 3099669 ~ 3107278 (-)
soul4 NA coding downstream 362970 2901146 ~ 2911531 (-)
LOC120566216 NA coding downstream 477349 2738444 ~ 2797152 (-)
LOC120566206 NA coding downstream 541223 2716457 ~ 2733278 (-)
zgc:110222 LOC103372080,LOC100694267 coding downstream 580858 2689977 ~ 2693643 (-)
LOC120550828 NA coding upstream 1250 3279426 ~ 3286257 (-)
LOC120550893 NA coding upstream 73170 3351346 ~ 3382291 (-)
kat14 NA coding upstream 105355 3383531 ~ 3399979 (-)
trnak-uuu NA coding upstream 148774 3426950 ~ 3427022 (-)
srd5a2a NA coding upstream 388737 3666913 ~ 3682870 (-)
G1104 NA non-coding downstream 88996 3175366 ~ 3185505 (-)
G1079 NA non-coding downstream 112630 3160950 ~ 3161871 (-)
G1065 NA non-coding downstream 172458 3101707 ~ 3102043 (-)
G1041 NA non-coding downstream 188651 3085634 ~ 3085850 (-)
G1039 NA non-coding downstream 192539 3081747 ~ 3081962 (-)
LOC120551207 NA non-coding upstream 34874 3313050 ~ 3324222 (-)
LOC120551162 NA non-coding upstream 65191 3343367 ~ 3345941 (-)
LOC120551253 NA non-coding upstream 108074 3386250 ~ 3387744 (-)
G1149 NA non-coding upstream 129588 3407764 ~ 3407971 (-)
G1150 NA non-coding upstream 130274 3408450 ~ 3408790 (-)
LOC120550734 LOC106675350 other downstream 58 3269522 ~ 3274443 (-)
LOC120550954 NA other downstream 33004 3232624 ~ 3241497 (-)
G1008 tmem178a,LOC102307988 other downstream 296386 2975238 ~ 2978115 (-)
G1003 tmem178a other downstream 310181 2963740 ~ 2964320 (-)
G974 NA other downstream 415199 2858496 ~ 2859302 (-)
LOC120551010 NA other upstream 27293 3305469 ~ 3313049 (-)
LOC120551303 NA other upstream 130645 3408821 ~ 3410295 (-)
LOC120555401 tmem63a,LOC106529083,LOC106934241,LOC103130112,LOC106936753,LOC102796925 other upstream 216711 3494887 ~ 3648473 (-)
G1240 NA other upstream 303042 3581218 ~ 3648230 (-)
G1242 NA other upstream 370512 3648688 ~ 3672538 (-)

Expression


Co-expression Network