LOC120555387 (LOC106675676,LOC106675675)


Basic Information

Item Value
gene id LOC120555387
gene name LOC106675676,LOC106675675
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3468124 ~ 3480130 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1593
ccaggATATTTGGTCTGGATATTTATTAATCTGACAGTTGTTAGTCATGCTTGgccaaaaagtataaaaagactTGCTCTCAATGCAGACATGCATATCACAGCTTCCAGTGCGATCAAGAGATTTAAGGATGATGACTCCAGTCGTGTTTTTTGTGCTGTTGGCTGTTCTAGGACAGACAAGTGGCCAATCTGATTCTAATATTGCTCAACTTGGAACTGTGATGCAGTCCTCCGTCTTTGACATTGGCATCCCTGAATTGGCCATTGATGGAAATTCGTGCTAGCGTCTGGGCACAGGGATCCTGTAGCCACACACTAAATGATTTTAAACCATGGTGGAGAGTGGACCTCCTGAAGACATATAAAATCAACACTGTCACCATCACCAACAGAAGAGATGCTGTCCACGAAAGAATCAATGGGGCTGAGATCCGCATTGGAAATTCCCTCGAAGACAATGGCAACGATAATCCCAGATGTGCTGTTATCTCGTCTATCGCAGCTGGGGCCTCCAAAACCTTTGTGTGTAATGAAATGGAAGGTCGTTATGTAAACATTGTGATTCCTGGAAGACAAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGCCTtcagcactgtaaaaaaaaataaaacaaatcgtaaaaaaaaacagtaaaaagtgTAATGGCAAAATTACCTTTAAACATGATCCTTTTATattcttttacattttgtgtTAAAATTAGATTCTCCATGTGGAACAGCTGAAACCGTAACAAGCTTGGAGCCATTTGTTTCTGAGGTCTCCTGTTTAGCCTTTTGTGTTTAGCCTTCTGTTTTTAGCCGATAAGGTCAAtcataaaacaatcacaaactcTGTACTCTGTCTCTCAGACACATTTTTCCTCTCCCTAGCAGCGGAGATAAGCAGGTGTTGTGACCTTGTTCTTAAAACAGGGGCAAAAGGGAGAGTGTGAAGAGATTCCAAACTGTTTATGGTGTTTAGGTTAATAGAGCCCTACGGGATCATCCACGACATCACACGGGCACCTCTGgttaatatttagattatttaatgaaagttttATCGATCTTCTTACCGTTTTTTCCAGCTAAAAGCTAACGAGTTAGCCATTACAGgggtgtctttggtgtctttgtaacctttacagaaggttttaTATCCATATATGTGACCGGAGTATCTTTTCGGAGTagttcagcaataaatccaaacgcttacatccaagatttatccactcgatGTCCATAATTTATCACGTTTTCGGTCATTTCTGCCGCTAGCTCTGTGCTACCGGCTCTTACCGTCtagtataaatctcccatgatgctttgcgagTTTGTTGAcgtttttcaaccaatgggaatGCAAGTCCGTCAGATAGTTCACTGACTGTAGGAAATCTGAGCgagaacaaagagtaaagtgaaaaagaaagaTAACTACGGTCTAtgaccgttctacagagaagaatggcgtcactgtttagatatttgggatacatttgggccttttttttgaagaaatgttagtcagaaatagtttgtcatttatattagttataatgttcattatgtttatttttgcactggatgactccaaatatataggagaactagacaacacaaatgcttgtgtagcattgctgtgtgtgtgatatcaatacatttgacattattattttgattattggcaaaagcgtctagacattttataaaaaaaaagtatatattttgtcaactgtatgagatatgtttatttcttcacagtttgacacacaagacatatgggaactgatttagacaggagattggcttagcttttattgttctgtgtgtgatatcaataaatatctgagattcattttccgttttatttgtctttaaggtcatacaacctttttttacattcaattgacctcactacagcacaaatattctaatagcccagtttttcctgaaaaaaatgatgtacattgattgactatagacaacagggttgatgatttacaagcttttttagaaaataaaaccagacggaaaaggaattgtaaaaatggcctcagGTTTCTCAGCGTTAAATATTTGTTCTTGCTAAAGATGCCTAGAGGAGGGGTGGCTCTGACTGTTTTTGCTATACTGTATAAGATGTGCTGTGTTCTAAGGTTGGCAGAAGACACTTTCCCACTGTGCTTTTGTGCTTGAGGAACTGTgttcctatatttgcaaatataaataaattctcaaagaccaaactttggtt
>XM_039794054.1
TATTAATCTGACAGTTGTTAGTCATGCTTGgccaaaaagtataaaaagactTGCTCTCAATGCAGACATGCATATCACAGCTTCCAGTGCGATCAAGAGATTTAAGGATGATGACTCCAGTCGTGTTTTTTGTGCTGTTGGCTGTTCTAGGACAGACAAGTGGCCAATCTGATTCTAATATTGCTCAACTTGGAACTGTGATGCAGTCCTCCGTCTTTGACATTGGCATCCCTGAATTGGCCATTGATGGAAATTCGTGCTAGCGTCTGGGCACAGGGATCCTGTAGCCACACACTAAATGATTTTAAACCATGGTGGAGAGTGGACCTCCTGAAGACATATAAAATCAACACTGTCACCATCACCAACAGAAGAGATGCTGTCCACGAAAGAATCAATGGGGCTGAGATCCGCATTGGAAATTCCCTCGAAGACAATGGCAACGATAATCCCAGATGTGCTGTTATCTCGTCTATCGCAGCTGGGGCCTCCAAAACCTTTGTGTGTAATGAAATGGAAGGTCGTTATGTAAACATTGTGATTCCTGGAAGACAAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGCCTTCAGTAAACACTGCTACAACTGGTCCTAATATTGCTCAACTTGGAACTGTGATGCAGTCCTCCGTCTTTGACATTGGCGTCCCTGAATTGGCCATTGATGGAAATCGTGCTAGCGTCTGGGCACAGGGATCCTGTAGCCACACACTAAATGATTTTAAACCATGGTGGAGACTGGATCTCCTGAAGACATATAAAATCAACACTGTCACCATCACCAACAGAAGAGATGCTGTCCACGAAAGAATCAATGGGGCTGAGATCCGCATTGGAAATTCCCTCAATGACAATGGCAACGATAATCCCAGATGTGCTGTTATCTCGTCTATCGCAGCTGGGGCCTCCAAAACCTTTGTGTGTAATGAAATGGAAGGTCGTTATGTAAACATTGTGATTCCTGGAAGACAAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGCCTTCAGTAAACACTGCTACAACTGGTCCTAATATTGCTCAACTTGGAACTGTGATTCAGTCCTCTGTCTTTGACATTGGCATCCCTGAATTGGCCATTGATGGACATCGTGCTAGCGTCTGGGCACAGCGATCCTGTAGCCACACACTAAATGATTTTAAACCATGGTGGAGACTGGACCTCCTGAAGACATATAAAATCAACACTGTCACCATCACCAACAGAGGAGATGCTGTCCACGAAAGAATCAATGGGGCTGAGATCCGCATTGGAAATTCCCTCGAAGACAATGGCAACGATAATCCCAGATGTGCTGTTATCTCGTCTATCGCAGCTGGGGCCTCCAAAACCTTTGTGTGTTATGAAATGGAAGGTCGTTATGTAAACATTGTGATTCCTGGAAGACAAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGCCTtcagcactgtaaaaaaaaataaaacaaatcgtaaaaaaaaa

Function

NR:

description
uncharacterized protein LOC106675676

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1593 True 2275 TUCP 0.40 5 3468124 3480130
XM_039794054.1 False 1532 mRNA 0.45 8 3468147 3478516

Neighbor

gene id symbol gene type direction distance location
rrbp1b NA coding upstream 19631 3413425 ~ 3448493 (+)
LOC120550686 LOC106676715 coding upstream 94983 3364816 ~ 3373141 (+)
LOC120557788 LOC100703858,LOC102778772,LOC103375691,LOC101465362,LOC107082671 coding upstream 308832 3157203 ~ 3159292 (+)
LOC120557776 NA coding upstream 340074 3109591 ~ 3128050 (+)
tmem178 tmem178a,LOC102307988 coding upstream 490695 2938097 ~ 2977429 (+)
LOC120555395 NA coding downstream 8213 3488343 ~ 3490010 (+)
LOC120562172 NA coding downstream 84592 3564722 ~ 3568010 (+)
psen2 psen2,LOC100710620 coding downstream 166894 3647024 ~ 3655642 (+)
pgap4 NA coding downstream 764128 4244258 ~ 4247932 (+)
LOC120568266 NA coding downstream 772989 4253119 ~ 4269471 (+)
G1156 NA non-coding upstream 25946 3435944 ~ 3442178 (+)
G1146 NA non-coding upstream 64426 3400904 ~ 3403698 (+)
G1145 NA non-coding upstream 67793 3400067 ~ 3400331 (+)
G1098 NA non-coding upstream 83708 3325615 ~ 3384416 (+)
LOC120551115 NA non-coding upstream 126381 3339495 ~ 3341743 (+)
G1189 NA non-coding downstream 11814 3491944 ~ 3494763 (+)
G1205 NA non-coding downstream 73619 3553749 ~ 3554040 (+)
G1203 NA non-coding downstream 80171 3560301 ~ 3578867 (+)
G1207 NA non-coding downstream 81337 3561467 ~ 3579755 (+)
G1218 NA non-coding downstream 169421 3649551 ~ 3650138 (+)
dzank1 NA other upstream 208366 3175601 ~ 3259758 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other upstream 310986 3128089 ~ 3157138 (+)
LOC120567073 sos1 other upstream 387934 2995029 ~ 3080190 (+)
LOC120567079 NA other upstream 396651 3068398 ~ 3071473 (+)
G879 NA other upstream 767149 2626243 ~ 2700975 (+)
G1191 NA other downstream 16476 3496606 ~ 3499104 (+)
LOC120562910 NA other downstream 312616 3792746 ~ 3814570 (+)
pex6 pex6,LOC104944420,LOC104961583 other downstream 928308 4408438 ~ 4436086 (+)
G1487 LOC103369331 other downstream 975077 4455207 ~ 4460404 (+)
G1600 NA other downstream 1497653 4977783 ~ 5038714 (+)

Expression


Co-expression Network