LOC120563544 (LOC100708833,LOC102313704,LOC101466655,LOC102192550)


Basic Information

Item Value
gene id LOC120563544
gene name LOC100708833,LOC102313704,LOC101466655,LOC102192550
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5235346 ~ 5327917 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2415
gtctgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtctctgtgtgtgtttgtctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtctctgtgtgtgtgtgtgtctgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttgtctgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtctgtgtgttgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtctctttgtgtgtgtgtgtgtatgtgtgtgtgtctatttgtgtgtgtgtgtgtgtgtgtgtgtgtctctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtcctggttCTGCAGAGCCCTCTGTCCTGCGGGGGCCTCTGTGCGGTCACACAGACTCGGTGTGGGGTCTGGTCTACAGCTCGGCCCACCAGCGCCTCCTCTCCTGCTCCGCCGACGGGACGGTCCGGCTGTGGAACGCCGCCGACACCTCGCCGTCTCTCGCCGTCTTCAACCACAGAGGAG
>XM_039807772.1
GTACCTGCAGGAGGTGGGGTACACCGACACCATCCTGGATGTGAAGTCTCAGCGAGTGCGAGCGCTGCTCGGTCTGACCGGAGACTCCGGAGACAGACCTTCGGAGAGGAGAGGCGAACTGATGGTCAACGGCACGGAGACGTCCTCCCCGAGGGACAGCGCCATGCTCAGTAAACCGGAGATGTCGGACTCGGCCGGCGTGCTGGAGGCCTTTAAGTTCATAGAGAGCGCCGCGGCGGAGTTCAGCGATGAGGACGAGGACGAGGACAGCCAAGGACGGGACAGGACCGCCTTAGACGTGGCGACGATGGTGAGGAAGAAACAGCCGTCCACGGCGTCTTCGTCGGCGTCTGAGCTCAGCGACGACCCCGACACGGAGGAGGCTCTGAAGGGTTTCGACTTCTTGGCGAGTCCCGACGAGATGGACGGCTCGCCGGAGTACCGGAGCGGAGAAGACAGCGGAGAGTGGGAGAAGGATGACCTGTCCCCTGGGGGGGAACTGTCCTGGGACGTGGACCAGGGGCTAATCGCCCAGCTCAAGGAGCAGTACAGGAAGGAACGCAAGGGCAAGAAGGGGGTGAAGAgaCCAAACCGGTCCAAGCTGCAGGACATGCTGGCTAACCTGCGGGACGCCGAGGAGCTTCCCTCCATGCAGCCGCCCGTAACGCCCCCGTCCCGCCCGCCGGTCCCCAGACTCAATGAGCACGAACTGGGACGCCCCGAAGACGAAGCGATGACCTTCCTGCCGTCGTCGGGGAAGTCCTTCATCCTGGGCCGGGTGGACGAGGCGGTCTCTAACGAGCTGGGACTGGGAGAACTGGCCGGGCTCACGGTCGCCAACGAGGCAGACAGCCTGGCGTACGACATCTCCAGCAGCCAGGACGCCCTGAGGAAGACCTGGAACCCTAAGTTCACCCTGCGGAGCCACTTTGACTCGGTGCGGAGCCTGGCCTTCCACCCGGTGGAGCCGATCCTGGTCACCGCGTCCGAGGATCACACCCTCAAACTGTGGAACCTGCAGAAGACCGCGCCCGCCAAGAAATGTGCTGCTCTGGACGTGGAGCCCATCTACACATTCAGAGCTCACAGCGGCGCCGTGCTGTGCGTCACCATGAGCTCCAGCGGCGAGCAGTGCTTCAGCGGCGGCGTGGACGCCACCATCCAGAGCTGGAACACCCCCAACCCCAACATCGACCCCTACGACTCATATGAGCCCTCTGTCCTGCGGGGGCCTCTGTGCGGTCACACAGACTCGGTGTGGGGTCTGGTCTACAGCTCGGCCCACCAGCGCCTCCTCTCCTGCTCCGCCGACGGGACGGTCCGGCTGTGGAACGCCGCCGACACCTCGCCGTCTCTCGCCGTCTTCAACCACAGAGGAGGTGAGACGCTCGCCACCTGTGTGCGTTAGCCGGCAGGAGAACGATCACAAAGTACCAACACCACGCTGTAACAATACTCTGGTACaagttagagtactaataccacgctgtaacaatactctggtacaagttagagtactaataccacgctgtaacaata

Function

NR:

description
PREDICTED: striatin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2415 False 806 TUCP 0.55 3 5235346 5327757
XM_039807772.1 True 1539 mRNA 0.62 10 5306988 5327917

Neighbor

gene id symbol gene type direction distance location
LOC120563443 NA coding upstream 38229 5180196 ~ 5197117 (+)
LOC120563472 NA coding upstream 55604 5158881 ~ 5179742 (+)
LOC120563603 stxbp6 coding upstream 286234 4947658 ~ 4949112 (+)
LOC120563657 NA coding upstream 295876 4856686 ~ 4939470 (+)
zgc:172076 NA coding upstream 428639 4783353 ~ 4806707 (+)
btbd3a LOC103354797,LOC102313104,LOC101466369,LOC100710091,LOC102793615,LOC104954790 coding downstream 33434 5361351 ~ 5371770 (+)
ndufaf5 ndufaf5 coding downstream 173115 5501032 ~ 5518108 (+)
LOC120564466 NA coding downstream 261752 5589669 ~ 5591008 (+)
LOC120564476 NA coding downstream 278537 5606454 ~ 5607801 (+)
LOC120563910 NA coding downstream 462380 5790297 ~ 5803234 (+)
G1761 NA non-coding upstream 9918 5224793 ~ 5225428 (+)
G1612 NA non-coding upstream 163411 5067789 ~ 5071935 (+)
LOC120563689 NA non-coding upstream 210424 5024030 ~ 5024922 (+)
G1582 NA non-coding upstream 392055 4838096 ~ 4843291 (+)
G1578 LOC103374759 non-coding upstream 397925 4821739 ~ 4837421 (+)
G1773 LOC108251774,LOC106535048,LOC107394211 non-coding downstream 7430 5335347 ~ 5340471 (+)
G1772 NA non-coding downstream 12675 5340592 ~ 5345899 (+)
G1784 NA non-coding downstream 21195 5349112 ~ 5414538 (+)
G1786 NA non-coding downstream 47661 5375578 ~ 5377774 (+)
G1774 NA non-coding downstream 50223 5378140 ~ 5379265 (+)
G1756 NA other upstream 12602 5218068 ~ 5222744 (+)
G1600 NA other upstream 196632 4977783 ~ 5038714 (+)
G1487 LOC103369331 other upstream 774942 4455207 ~ 4460404 (+)
pex6 pex6,LOC104944420,LOC104961583 other upstream 799260 4408438 ~ 4436086 (+)
LOC120562910 NA other upstream 1420776 3792746 ~ 3814570 (+)
G1775 NA other downstream 44700 5372617 ~ 5374907 (+)
acaa1 acaa1,LOC102793903 other downstream 59476 5387393 ~ 5471409 (+)
snrpb2 snrpb2 other downstream 548630 5876547 ~ 5916374 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 1057684 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 1079483 6407400 ~ 6437217 (+)

Expression


Co-expression Network