LOC120561808 (srf,LOC103372093)


Basic Information

Item Value
gene id LOC120561808
gene name srf,LOC103372093
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2858504 ~ 2881120 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805068.1
GTCATTTCCTTATGTGGAGCGCAGTGTTTTGTCACTGATTACTgtacaaaaacacaactttTGTAAACTTTATTCACTGATTCTTCTCAAACTGGATCAGTTTTTATGTAGAAAATGTTTCCTGATGTCTCCTCCGACGTTCCCCGGCCGCTCGGCGGGAACTCTCGGTGATTTACGGAGTTTGATGGACAGAGAGCTTCACTTGTTGCTAAAGTAACTGCTCACTGATGCTAACTATAGCCGAAGATCCTCTAAGCTAACTGTAGCTgccgttagctagttagctcAGTTAGCCGAGCATCTAGCGGTTAGCGGTGCTATTAGCTGACTGTGCCCGGCCTGGGAGCTCGGAGAGCcggcaggaggaggaggttttccGGACCGGGGggcggtgggggggggggacccaGCGGGGAATGGGCACCAGAACCGGAGCCGGGCTGAACACGGCCGGACCGGGACCGAACAATGACCCGGATGTGATTTCCAGCGGGTCCGAGCCGGACTCTGACTCCGGGGAGGACACGGCGGGTTCGGGCGGGGACCGGAGAGGCGTGAAGCGGGAGCGGAGTGAGCGCGAGGTCGGTACCTCCCGGGGTCTGATCCCCGGCGGGCTGCCTGGAGCCAAACCCGGGAAGAAAACCAGAGGAAGAGTAAAGATCAAGATGGAGTTCATTGACAACAAACTGCGGCGCTACACGACTTTCAGCAAGAGGAAGACCGGCATCATGAAGAAGGCCTACGAGCTGTCCACGCTGACTGGGACCCAGGTCCTGCTGCTGGTCGCCAGCGAGACGGGCCACGTGTACACGTTTGCGACCAGGAAGCTGCAGCCAATGATCACGTCTGAGACGGGGAAGGCTCTGATCCAGACCTGCCTCAACTCGCCAGACTCCCCGCCACGCTGGGACCCCTCCTCCGACCAGAGGATGAGCGCCACGGGCTTCACGGAGACAGACCTCACCTACCAGGTGGCCGAGTCAGAGGGGGCCAAGGTAACGCCACTGGCGTGCCAGGGCTTCACTCTGATGTCAGGAGGCGGAGTCTCCCAGCAGCTGCAGAGCATTCAGCTTCAGCCctcgaccaatcagagcagctcGGACACCCGCAGCCCCTCCTCCACAGCCAGTGTCTCTTCGTCTTCTTCTTCGTCCTCGGGGTCTGGTCACATGATGTACTCCGGAGGTCACACGGTGATGTACGCTGCTCCTACGTCCTCATTGGCTGACGGCAGCCTCACGGTCCTCAACACGTTCCCCCCGACAGGCCACGCCCAGTCACATGACCCCGcCCTCCCGCAGGTCTTCCTCACTTCGCTGCCTCCCGGCGGAGCTCAGATCCCCGTCTCTGCAGTCCAGCTGCACCAGATGGTGATCAGTCAGCAGAGCAGCAACAACCTGACAGAGCTGCAGGTCATcagcctggacacacacacacacacctagagaggactgatacacacacacacacacacacacacacaca

Function

symbol description
srf Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; protein homodimerization activity; and serum response element binding activity. Involved in several processes, including cell migration involved in sprouting angiogenesis; negative regulation of amyloid-beta clearance; and regulation of transcription, DNA-templated. Acts upstream of or within positive regulation of cell differentiation; positive regulation of transcription by RNA polymerase II; and trophectodermal cell differentiation. Located in nucleus. Implicated in cardiomyopathy and lymphangioleiomyomatosis. Biomarker of congestive heart failure and lymphangioleiomyomatosis.

NR:

description
PREDICTED: serum response factor isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K04378 SRF; serum response factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805068.1 True 1485 mRNA 0.59 7 2858504 2881120

Neighbor

gene id symbol gene type direction distance location
LOC120566159 NA coding upstream 274242 2572980 ~ 2584262 (+)
LOC120561353 LOC102083160 coding upstream 464217 2362732 ~ 2394287 (+)
mrps28 mrps28 coding upstream 590881 2266855 ~ 2267623 (+)
mtif2 mtif2 coding upstream 611570 2228163 ~ 2246934 (+)
LOC120566049 NA coding upstream 638651 2211994 ~ 2219853 (+)
eif4a3 eif4a3 coding downstream 1803 2882923 ~ 2891005 (+)
tmem178 tmem178a,LOC102307988 coding downstream 56977 2938097 ~ 2977429 (+)
LOC120557776 NA coding downstream 228471 3109591 ~ 3128050 (+)
LOC120557788 LOC100703858,LOC102778772,LOC103375691,LOC101465362,LOC107082671 coding downstream 276083 3157203 ~ 3159292 (+)
LOC120550686 LOC106676715 coding downstream 483696 3364816 ~ 3373141 (+)
G884 NA non-coding upstream 158427 2697529 ~ 2700077 (+)
G886 NA non-coding upstream 163114 2694227 ~ 2695390 (+)
LOC120566193 NA non-coding upstream 188749 2658402 ~ 2669755 (+)
G865 NA non-coding upstream 269428 2588721 ~ 2589076 (+)
G857 NA non-coding upstream 287004 2571292 ~ 2571500 (+)
G939 NA non-coding downstream 16277 2897397 ~ 2910958 (+)
G941 NA non-coding downstream 23216 2904336 ~ 2910703 (+)
G954 NA non-coding downstream 58235 2939355 ~ 2939795 (+)
G956 NA non-coding downstream 59571 2940691 ~ 2940972 (+)
G953 NA non-coding downstream 99313 2980433 ~ 2982716 (+)
G879 NA other upstream 157529 2626243 ~ 2700975 (+)
LOC120566146 LOC107082675,LOC108251143,LOC103383281 other upstream 288050 2558876 ~ 2570454 (+)
G714 LOC103375176,LOC105920176,LOC100706186,LOC101468385 other upstream 512456 2307285 ~ 2346048 (+)
LOC120566000 NA other upstream 891249 1946145 ~ 1967255 (+)
G363 LOC104946033,LOC104961227 other upstream 978958 1593822 ~ 1879546 (+)
LOC120567073 sos1 other downstream 113909 2995029 ~ 3080190 (+)
LOC120567079 NA other downstream 187278 3068398 ~ 3071473 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other downstream 246969 3128089 ~ 3157138 (+)
dzank1 NA other downstream 294481 3175601 ~ 3259758 (+)
LOC120555387 LOC106675676,LOC106675675 other downstream 587004 3468124 ~ 3480130 (+)

Expression


Co-expression Network