LOC120566421


Basic Information

Item Value
gene id LOC120566421
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1733546 ~ 1749692 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812876.1
GTGAGGTTAAGTGAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTCGAGAcaagtctctgtttctctctgaaagaaaactcaaactgactTCATCAGGTCTTTCTCAACAACACAGCAGAGTCTCTGCCAAACACTGATATGGCTGCTGCAAACTATCTATCATctgaagatcagtttctgtgctccatctgtTTGGATGTGTTTACTGATCCTGTCACCATACTATGTGGACACAACTTCTGCAAAAACTGCATCAATGAACACTGGAATACTAATGACCAGTACCTGTGTCCGATGTGTAACAAGGTTTTCAACATAAGACCTGAGCTGCATGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAAACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgaCAGTTTCACGtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgcACTGTTTTAGACCACAAGAAGCATGATGTTGTTCCTCTGAAAGAAGGATATGAAGGGAAGAAGGCAGAGCTGGGGAAGACAGAGGCTGAAATTCagcagatgatccagaagagacgactgaagattcaggagatcaaacactcagtcgacctcagtgaggaagatgcagacagagagatagcagaaggtgttcaggtcttcacttctctgaaggagtctgttgagagaggcctgaatgagctcatcaacacgatcaaagagaagcagaaaacaacagaaaaacaggccgaagctttcatcaaagagctggaacaggaaatctctgagctgatgaagagaagcactgaggtggagcagGTGTTACGCTCTGAAGaccacctccatcttctccagagtGTCCAGTCCCTAAACATCCAACAACCTCCACCCACCAAGGACTGGACAGAGGTCAGCATCCGTCCATCATCATATGAGGGGACTGTGGTGAAAGCTGTGGTtcagctggaggagacactcagtaaagagatgaagaagctgcttgaAGCCGAGCTGAAGAGGGTccagcagtatgcagtggatgtgactcttgatcctgatacagcaCATCCTAAACTCATCCTGTCTTATGATGGGAAACAAGTGAATCACGGTGGTGTGAGGAAGAATCTCCCAGACAACCCAGAGAGATTTTCTAATTGTGTTAATGTTTTAGGAAAACAGAGTTTCTCTTCAGGCAGATTTTACTTTGAGGTTCAAGTTAAAGGAAAGACTAATTGGACTTTAGGAGTGGCCAGAGAGTCGATCAACAGGAAGGGAGACATCACAGTGAGCCCTCAGAATGGTTACTGGATTATAGTGTTGAGAAATGGAAATGAGTATAAAGCTGCTGCTGACCCTTcagtccttctctctctgaagtctcctcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgacgtagatgctgcagctcttatctactcctttactggctgctccttcactgagaaactcttcccATACTTCTGTCCCAGTCTTAATTATGGTGGTAAAAACTCTGCccctctgatcatctctcctgtcagagtaaactaatcacttaactttgattcatttattttcattcaggGAAACAAATGTTAATAATTAGTTTAGatcttattttctatctttttaatgtagTAATTGATTTACACTTAATTGTtaagattttttaaattatatgtaTTCCATTACATAGTCAACAAGCTCATTTAATGCATTCATCTTTTCAACACTGCATCAGAATATCTATTTTAAAAAACCTCTGTTAAAtccacagacatttattttaacttctAAAAGAAATCAGTTTCAAAAGACACCTTCATTTAAGAGTAAGGCTGTATCTCAAACCGCACACTTCTGTCAGTAtactgctaatgtgcactgaccacttaccgtagtgcccactttggaTGGTTAGTGTCGTCCCAAACGGAGCACTTAacgttaaaacactta
>XR_005640399.1
GTGAGGTTAAGTGAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTCGAGAcaagtctctgtttctctctgaaagaaaactcaaactgactTCATCAGGTCTTTCTCAACAACACAGCAGAGTCTCTGCCAAACACTGATATGGCTGCTGCAAACTATCTGCCATctgaagatcagtttctgtgctccatctgtctggatgtgttcactgatccTGTCAGCACACCATGTGGTCACAACTTCT

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812876.1 True 2193 mRNA 0.44 2 1745737 1749692
XR_005640399.1 False 241 transcript 0.46 2 1733546 1749692

Neighbor

gene id symbol gene type direction distance location
LOC120560873 LOC104946033 coding downstream 104387 1625530 ~ 1629159 (-)
tomm20b tomm20,LOC103375291,LOC103383373,LOC100703030,LOC108247505 coding downstream 274679 1451999 ~ 1458867 (-)
LOC120566769 NA coding downstream 1155554 572764 ~ 577992 (-)
tbce NA coding downstream 1303562 404857 ~ 429984 (-)
LOC120560351 NA coding downstream 1403513 319682 ~ 330033 (-)
LOC120566021 NA coding upstream 347677 2097369 ~ 2106501 (-)
LOC120566031 NA coding upstream 378881 2128573 ~ 2135521 (-)
sde2 NA coding upstream 502360 2252052 ~ 2266353 (-)
LOC120566094 LOC103375177,LOC102205209,LOC101467885,LOC100705917 coding upstream 521768 2271460 ~ 2302586 (-)
LOC120566106 LOC105920176,LOC103375176,LOC108251144 coding upstream 553872 2303564 ~ 2345270 (-)
G435 NA non-coding downstream 37516 1689521 ~ 1696030 (-)
G457 NA non-coding downstream 44108 1615890 ~ 1689438 (-)
LOC120566920 NA non-coding downstream 57565 1609532 ~ 1675981 (-)
G459 NA non-coding downstream 108409 1616694 ~ 1625137 (-)
G593 NA non-coding downstream 134438 1581983 ~ 1599108 (-)
G466 NA non-coding upstream 19484 1769176 ~ 1792739 (-)
G441 NA non-coding upstream 27751 1777443 ~ 1789759 (-)
G608 NA non-coding upstream 36098 1785790 ~ 1803387 (-)
G438 NA non-coding upstream 59475 1809167 ~ 1849971 (-)
G609 NA non-coding upstream 74266 1823958 ~ 1836576 (-)
stab2 NA other downstream 157051 1470417 ~ 1576495 (-)
G565 LOC105912973,LOC105893694,LOC105900140,LOC105893089 other downstream 373073 1359664 ~ 1360473 (-)
G519 NA other downstream 758719 966236 ~ 974827 (-)
G516 myhz1.2,LOC106938366,LOC104959125 other downstream 847203 885349 ~ 886343 (-)
G413 NA other downstream 1294098 438657 ~ 439448 (-)
G670 LOC103370005,LOC106529077 other upstream 299377 2049069 ~ 2050384 (-)
G974 NA other upstream 1108804 2858496 ~ 2859302 (-)
G1003 tmem178a other upstream 1214048 2963740 ~ 2964320 (-)
G1008 tmem178a,LOC102307988 other upstream 1225546 2975238 ~ 2978115 (-)
LOC120550954 NA other upstream 1482932 3232624 ~ 3241497 (-)

Expression


Co-expression Network