tpcn3 (LOC103368820,LOC102314232)


Basic Information

Item Value
gene id tpcn3
gene name LOC103368820,LOC102314232
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4312607 ~ 4332900 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815719.1
GGTTTATTAGAGGCGCACAAACAGCCGCTCGGATCAGTCCCGAGTCAGTCCGACTGCAGCCAGATGTTTGTCCCGCTGTCCCGTTAGAGAGCAGCAGGCAGGCGGGGAGGGAGGAGACCTGGGATGTGGACGGTTACAACTCAGACCAACACCGCTAAGACAAGTCTGGACTTCTGTCCTGCAGAGACACAATCCCTCCGACTCCGACTGGCTGTCTGGAAACTCTTCACGGAGCGTTACAATCACTTCTCCAAAGtctagttgttgtttttggtggggtgggggggtgcaCGAGTCGTGTCGGAAGTTTGAGAGATGTCCGAGCCAGAGAAGAGCGAGGACATTCCTGATGAGTctgcaggaaaagaaaaaggaagtcCAAACGGAGGGAGTCCTGCGAAGAGCgaagaggattttaacctgGCTGCCATCTACGTGTCGGACGCTCAGTACAACAGGAACATCTACTTCGACACGTCGCCACAGGCGGTCAGacTGTATCTGCGCTACAACCACTGGATCCCTAAGGTGCTCCTGTACTTCTTCATCCTGGTGGATCTGTCTCTCGCCCTCTTCGAGGACCCGGCAATGTTTCCTCTGCCCATATGGGCCACCATGCTGGTGGAGCTGCTCTGTCTGCTGGTCTTCACCCTTCGACTCGTTCACTACGCCCAAGTCATCCCTCGGGACAAGTTCTGGAAAGATCCCAAAAACATCTGCATCATCGTCATCCTCGTGCTCACTCTGGTGGATATGATCATCTACGGAGCGCTGAAAGCGACCGACTGTTACGGCGTCCGCTGGTCCAGAGTCCTGCGCCCGCTGCTATTGGTCAACGTCACAGAGGGACGCCAGcTCCGCCGAGCGTTCAGAAGCATCCGGAACGCTCTGCCTCAGATCTTCTACGTCTTCCTGCTCTTCATGTTCAGCCTCCTCATCTTCTCACTCATGGCGCTCAAACTGCTGGGCAAACGAGGTCTGAAGACCATCGACGGCTCTCCGTACTTCACCAACTACCTGCAGATCCTCTTCGACCTGTACGTCCTGGTCACCACGGCCAACAGCCCCGACGTCATGATGCCGGCGTACAACAACAGCTACGTCTTCGCCATCTTCTTCATCCTGTACATCCTCATCAACACCTACATCTTCATGTCCGTCTTCTTGGCCGTCGTCTACAACAACTACAAGAAGTATCTGAAGGAGGAGGTACGGCAGCTGGTGAGGGCCAAAAGGCACAAGATGGTGCAAGCGTTCGGCGTGCTGCAGGAGCAGAGGGAGGGGGGCGGCGAGCCCGTGGTGACTCACCACAACTGGAACCAGCTGATCCGATTGGTCCAGCCCGACATCGGGAACGCCCACCGGGAGCTGCTGTGGAGCGTCGCCGACGACAACAACCAGGGCTGCATCGGGAAGGTGGCGTTCGTCCAGATGGCCGACCTGCTGAACATCGAGGTGATCACGCTCaagtcaaggccacacccactCCACAGTCTGTGCCCCGCCCTCTACCTGTCGGCCCCCAGCCGCCTCCTCTGCCGAGTGGTCCAACACCGggcCTTTGGCATCGTGTACGACCTGATCATCCTGGTGAACGCCGTGTTCATCGGTCTGGACGAGGAGAATCCGCTGATCGCTAACTCGGAGTGGGCCTTCCTGGCCCTGTACTTGCTGGAGATCCTGCTGAAGCTCTACGTGTTCGAGCCCCGAGCGTTCTTCTCCCGACACAGCTTCTGGAACTGGTTCGACACCGTCATCGTGGTCTCGGCTCTCATCGCCACCATCATCAACTCCGCCGTCACGTCAACGGGGAATTACACCAGTCGTCAGATCCTGGACATCGTCTTCATCCTGCGAGTTCTCCGGCTGATCCGGGTGGTGGACAGCATCAAAAGGTTTCGTACTATCATCAACACTCTGATCCGGATCGGACCGGCCATTCTCACATTTGGACAGCTGATTATTGTGGTGTACTACATCTTCGCCATGGTGGGGATGGAGCTGTTCAAAGGGAAGGTGAAGTTTTACGCCGAGGACTCCAGCGACCCGGAGAAGGCGTTCTGTGGAAATCCGCTGCTGAAAGGAAGTGAATTCGCACAACTCAACTACTGCAAGAACAACTTCAACAACGTGGTGTCGTCCTTCGTCCTGCTGCTGGAGCTCACCGTGGTCAACCAGTGGCACGTGCTCAGCAGCGGCTTCGCCACCGTCACCCACGCGTCCGCCCGGCTCTTCTTCATCCTGTTCCACATCATGGTCGTCATCGTCATCATCAACATCTTCGTGGCGTTCGTGCTGGAGGCGTTCTTCGTGGAGTACTCGGTGGAAAAGAGCGACCTGCAGACGTCTCTGGAGAGGAAGATCGAGGAGCTGGAGCTGGCTGTGGCACAGGAGAAATTGGAGGATAATTTGGTGAACGCCATGGAAACCATGGACAACGACCTGGAAGCCGGCCAATCGGGGAACACCAAACCCGCCCTGATGTTTAAAATCGCTTCAAAAAGATATCGGACGGTGGACGCTCTGCTGCAGCGGATGTTCGAGGCCGATCTGGACCCCGAAGACTTCGCTGAGAACGACGACCAGACCAACTTTGAGAACCCAACGTTTCAACCTGCGCAGCCTTGAACGCACAGATCCATACAAAGGGAACCAGATTCTATCATTTCTATCCAGTTTTATACTCGGCATCATCTCACGTGTGTCTAAATCGGATGTTTATCCAgtgatatatttttgtattcctgtCTTGTAGTGCTGTGTAGAAACACATAAAGAATATTTACACTGTT

Function

NR:

description
two pore calcium channel protein 1-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815719.1 True 2792 mRNA 0.55 19 4312607 4332900

Neighbor

gene id symbol gene type direction distance location
LOC120568266 NA coding upstream 43136 4253119 ~ 4269471 (+)
pgap4 NA coding upstream 64675 4244258 ~ 4247932 (+)
psen2 psen2,LOC100710620 coding upstream 656965 3647024 ~ 3655642 (+)
LOC120562172 NA coding upstream 744597 3564722 ~ 3568010 (+)
LOC120555395 NA coding upstream 822597 3488343 ~ 3490010 (+)
rcor3 rcor3 coding downstream 166113 4499013 ~ 4517076 (+)
traf5 NA coding downstream 188199 4521099 ~ 4538660 (+)
zgc:172076 NA coding downstream 450453 4783353 ~ 4806707 (+)
LOC120563657 NA coding downstream 523786 4856686 ~ 4939470 (+)
LOC120563603 stxbp6 coding downstream 614758 4947658 ~ 4949112 (+)
G1363 NA non-coding upstream 57921 4254343 ~ 4254686 (+)
G1361 NA non-coding upstream 61134 4248069 ~ 4251473 (+)
G1360 NA non-coding upstream 72869 4239243 ~ 4239738 (+)
G1324 NA non-coding upstream 194441 3883301 ~ 4118166 (+)
G1333 NA non-coding upstream 374943 3936749 ~ 3937664 (+)
G1367 NA non-coding downstream 2467 4335367 ~ 4335591 (+)
LOC120568418 LOC106675372 non-coding downstream 3802 4336702 ~ 4338765 (+)
G1383 NA non-coding downstream 87562 4420462 ~ 4424254 (+)
G1385 NA non-coding downstream 110884 4443784 ~ 4450576 (+)
G1489 NA non-coding downstream 136906 4469806 ~ 4470109 (+)
LOC120562910 NA other upstream 498037 3792746 ~ 3814570 (+)
G1191 NA other upstream 813503 3496606 ~ 3499104 (+)
LOC120555387 LOC106675676,LOC106675675 other upstream 832477 3468124 ~ 3480130 (+)
dzank1 NA other upstream 1052849 3175601 ~ 3259758 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other upstream 1155469 3128089 ~ 3157138 (+)
pex6 pex6,LOC104944420,LOC104961583 other downstream 75538 4408438 ~ 4436086 (+)
G1487 LOC103369331 other downstream 122307 4455207 ~ 4460404 (+)
G1600 NA other downstream 644883 4977783 ~ 5038714 (+)
G1756 NA other downstream 885168 5218068 ~ 5222744 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other downstream 902446 5235346 ~ 5327917 (+)

Expression


Co-expression Network