LOC120563678


Basic Information

Item Value
gene id LOC120563678
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4708204 ~ 4710879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639997.1
AAAGATCTGATTGGCTTGTTTTTGTCACGTTTTCTGATCTAATCAGCCCAGACCATCAAGTACAAGTCTAACATGTGAGACAGCTGGTTTTCCTCCTCCTGATCAGACATGTTAGGCAACTCAGCTAGGCCACCTGACCGAACAGCTGAGACAGCCAGGTTAAATCAAACACTCCTGGAAGGGAAGGAACAGCCTCCTCCAGTCACTGCCTTCACCGCCACTCTGCCTCCAGTCAGCTGGCTTCTCCATCCAGTCCCTCCCTGGCGGTTCCCTGCTCCAGCCTGCTTCAGCTCTCACCTTCCTGCGCTTCAGTGCTTCCCCTGCGGATCCCTCAGCCCTGGTCTCCCCGAGCTCTCTGTCCCCCGTTCCAGTCTCCCAGTCTTCCCACTTCCCCATTCACTTCCCCATTTTTCCCTAATAAAATAACTTTTGCTGA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639997.1 True 436 lncRNA 0.53 4 4708204 4710879

Neighbor

gene id symbol gene type direction distance location
traf5 NA coding upstream 169544 4521099 ~ 4538660 (+)
rcor3 rcor3 coding upstream 191128 4499013 ~ 4517076 (+)
tpcn3 LOC103368820,LOC102314232 coding upstream 375304 4312607 ~ 4332900 (+)
LOC120568266 NA coding upstream 438733 4253119 ~ 4269471 (+)
pgap4 NA coding upstream 460272 4244258 ~ 4247932 (+)
zgc:172076 NA coding downstream 72474 4783353 ~ 4806707 (+)
LOC120563657 NA coding downstream 145807 4856686 ~ 4939470 (+)
LOC120563603 stxbp6 coding downstream 236779 4947658 ~ 4949112 (+)
LOC120563472 NA coding downstream 448002 5158881 ~ 5179742 (+)
LOC120563443 NA coding downstream 469317 5180196 ~ 5197117 (+)
G1493 NA non-coding upstream 187718 4520172 ~ 4520486 (+)
G1489 NA non-coding upstream 238095 4469806 ~ 4470109 (+)
G1385 NA non-coding upstream 257628 4443784 ~ 4450576 (+)
G1383 NA non-coding upstream 283950 4420462 ~ 4424254 (+)
LOC120568418 LOC106675372 non-coding upstream 369439 4336702 ~ 4338765 (+)
G1578 LOC103374759 non-coding downstream 110860 4821739 ~ 4837421 (+)
G1582 NA non-coding downstream 127217 4838096 ~ 4843291 (+)
LOC120563689 NA non-coding downstream 313151 5024030 ~ 5024922 (+)
G1612 NA non-coding downstream 356910 5067789 ~ 5071935 (+)
G1761 NA non-coding downstream 513914 5224793 ~ 5225428 (+)
G1487 LOC103369331 other upstream 247800 4455207 ~ 4460404 (+)
pex6 pex6,LOC104944420,LOC104961583 other upstream 272118 4408438 ~ 4436086 (+)
LOC120562910 NA other upstream 893634 3792746 ~ 3814570 (+)
G1191 NA other upstream 1209100 3496606 ~ 3499104 (+)
LOC120555387 LOC106675676,LOC106675675 other upstream 1228074 3468124 ~ 3480130 (+)
G1600 NA other downstream 266904 4977783 ~ 5038714 (+)
G1756 NA other downstream 507189 5218068 ~ 5222744 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other downstream 524467 5235346 ~ 5327917 (+)
G1775 NA other downstream 661738 5372617 ~ 5374907 (+)
acaa1 acaa1,LOC102793903 other downstream 676514 5387393 ~ 5471409 (+)

Expression


Co-expression Network