dcaf13 (dcaf13)


Basic Information

Item Value
gene id dcaf13
gene name dcaf13
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 2174104 ~ 2192793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806838.1
tatcccacaatgcaacgccGTCAGATGATTTTCTTCATCAACACATGGCCAGTACTTGctaatatttttcttatttaacTTAAACCTAACAGCAGTTTTTAAGTGTGTGTCCATTTTTATTCTTCTGCCAAATGAAAGTGAAAGTCCTCTCGAGGAACCCGGATGATTATGTCCGGGAGACCAAACTAGATATTCAGCGTGTCCCTAGAAACTATGACCCAGCACTCCATCCGTTTGAGGTGAGCAGAGAGTACACCCGGGCTCTGAATGCCACTAAGCTTGAGAGGGTGTTTGCTAAGCCTTTCCTGGCCTCTCTGGATGGACACAGAGATGGGGTGAACTGCATGGCCAAGCACACCAGGAACCTCTCCACCCTGCTCTCTGGCTCCTGTGATGGGGAGGTGAAACTGTGGAATCTGACCAAACACGAATGTGTCCGCACACTCCAAGCACATGAAGGTTTTGTCCGTGGAATGGTCGTCCGCTATTGTGGAACATCCTTCTTTACGGTTGGTGACGACAAAACAATCaagcaatggaaaatggaggcgCCAGGTtacggagaggaagaggagccacTCAACACTATTCTGGGCAAGACAGTCTTCACAGGACTAGACCATCACCAGAAGGATGCTGTGTTCGCAACATGTGGCCAGCAGGTGGACATCTGGGACGAGCAGAGGAGCAGCCCAATCCGCTCTTTCACTTGGGGCGTAGACAGCTTCAGCAGTGTCCGCTTCAACCCTGTGGAGACTGAACTTCTTGCAAGCTGTGCCTCTGACAGAAGTATAGTACTGTATGACATGAGAGAATCAGCACCACTCAAAAAGGTTATTATGACAATGAGGAGCAACACTTTGTGCTGGAACCCTATGGAAGCCTATTACTTCACATGTTCAAATGAGGACTACAACCTCTACACATATGACATGCGGTACCTGGACCGGCCAGTCACAGTGCACATGGACCATGTCTCTGCAGTGCTGGATGTTGACTATTCTCCAACTGGGAAGGAGTTTGTATCTGCCAGTTTTGACAAAACCATCCGCATCTTCCCCAAGGACAGTGGCCACAGCAGGGAGGTCTACCACACCAAACGCATGCAGCACGTCATCTGCATAAAGTGGTCGTCGGACAACAAATACATCCTGAGTGGTTCTGATGAAATGAATATCCGACTGTGGAAAGCCAACGCAGCTGAGAAACTAGGAGTGCTGGCCCCCAGAGAGCGGCAGGCCGCCAACTACAGTCAGAAGCTGAAGGAGAAGTTCCAGCACCACCCGCAGATCAGACGCATCGCTCACCACCGACATCTGCCCAAGAACATCTACCACCAGACCAAGGAGCTGAGGGTCATGAAAGAGGCTCGCCGTAGGAAgGAGAGGAATGTCCGAAAGCACAGCAAGCCAGGAAGTGTTCCCGTGGTGTCTGAGAAGGAGAAGCATGTTGTGACGGTGGTCAAATAGGCCGGGTCTGAGACGAGAACAGAAGACCGGAATGGAGATGAGGTGGACCCCACGATCACACCAACATGAGACCTGTTCAGACTGCTCTCACTTAAGAATTGAAGAAAATAAGTTTGAATTTGTCAGTTGTGGGAAGGACTAGTGACAAGTTCTGCATCGGTTGAAGTACCAGGAAACAGACTGTAAATACATCTTGTAAAGCATTCGCTGTACTTTTCACTGAGCAGTTGTTGTAGGACTCTCTTTACACATCTACACATTTCTGTTTTGCTCCTGTATTTGAGTGACTAATCGTCACACATTTTGCTTTAAGCAAGTTTGCATTTTTTATCACAGGATCCACGACGATTTAAGAAATGAACGGATTAAATTGATTCAATGTTTTAAAGAATGTCGCGTGACTTGGTACCTACTTGCAACAAAATGTGTTCCCTTTGTTTTATAGTTTTAGTTCTTATGAATTCAGTTCAAGAAATGTGCTACAGTTTGTTATTAAAACTACCAGAGATAAA

Function

symbol description
dcaf13 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex and small-subunit processome. Predicted to be active in nucleolus. Orthologous to human DCAF13 (DDB1 and CUL4 associated factor 13).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 13

GO: NA

KEGG:

id description
K11806 DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806838.1 True 1981 mRNA 0.47 11 2174104 2192793

Neighbor

gene id symbol gene type direction distance location
rims2a rims2,LOC106523613 coding downstream 2868 1982404 ~ 2171236 (-)
LOC120561841 NA coding downstream 194894 1977271 ~ 1979210 (-)
oxr1a oxr1 coding downstream 523465 1376272 ~ 1650639 (-)
si:dkey-29h14.10 NA coding downstream 858968 1308856 ~ 1315136 (-)
LOC120561787 azin1 coding downstream 1001559 1160199 ~ 1172545 (-)
LOC120562915 cthrc1 coding upstream 8745 2201538 ~ 2207789 (-)
LOC120562568 fzd6 coding upstream 17063 2209856 ~ 2226422 (-)
mms22l mms22l coding upstream 101748 2294541 ~ 2319405 (-)
fbxl4 fbxl4 coding upstream 421079 2613872 ~ 2635658 (-)
faxcb faxc,LOC102781468 coding upstream 469103 2661896 ~ 2692862 (-)
G69995 NA non-coding downstream 45363 2128471 ~ 2128741 (-)
G69932 NA non-coding downstream 209797 1956191 ~ 1964307 (-)
G69927 NA non-coding downstream 226947 1946945 ~ 1947157 (-)
G69893 NA non-coding downstream 497753 1676118 ~ 1676351 (-)
G69866 NA non-coding downstream 819079 1354298 ~ 1355025 (-)
G70090 NA non-coding upstream 415449 2608242 ~ 2608898 (-)
G70081 NA non-coding upstream 417559 2610352 ~ 2611804 (-)
G70092 NA non-coding upstream 445269 2638062 ~ 2638288 (-)
G70094 NA non-coding upstream 451080 2643873 ~ 2644416 (-)
G70155 NA non-coding upstream 541156 2733949 ~ 2735724 (-)
zfpm2a zfpm2 other downstream 312938 1725158 ~ 1861166 (-)
osr2 osr2 other downstream 1441348 728485 ~ 732756 (-)
usp45 usp45 other upstream 534375 2727168 ~ 2818027 (-)
G70407 NA other upstream 1436340 3629133 ~ 3629818 (-)
LOC120563202 NA other upstream 1786518 3979311 ~ 3979414 (-)
eny2 eny2,LOC100692744 other upstream 1879531 4072324 ~ 4077811 (-)
cep76 cep76 other upstream 2169202 4361995 ~ 4445053 (-)

Expression


Co-expression Network