trmt1l (trmt1l)


Basic Information

Item Value
gene id trmt1l
gene name trmt1l
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4685224 ~ 4713233 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU125908
CGAAGAGGAAGTCGGGAGACGAGTCGGGGAACGTAGTGAAGAAGATGAAGTCCGATGCGTCTCTGGATCACCCGCCCTTCTACTACAGCATCCACCGCCACAGCATCAGAGGCATGAACATGCCCAAGTTGAACAAGTTTCTTCAGTACCTGACGGAGGCCGGCTTCAGGGTGAGTCGGACTCACTTCGACCCGACGGGCGTTCGAACCGACGCCACGCTGGAGCAGTTTAAGTCTGTCCTCACCAAGTACAGCGTCCCCACGTACACCAACGCCAACGCCGCGCAGAGCAGCGCGAGCGCCGAGACGACCCAGTGAGAGAAACGAGAGCAGAAAATCATTCACACGAAATCATCCGCTCATCTGGTTTCTACTGTTTCTGTGTCACCTGAACAAAGTTCTGACTGCACTGATGTCTGATGCTTTAACTAGAACTAAGTAGAAACTCTTTAATCAAACCAAAACTGGTGAGGATTGCCTTTTGCTAAAACCGCACACCAAACTGATCCTGCAGCACGGATGATGTttctctatttatttcagatttctctttttatttcattacttgctgatttattgtctttttttctgtttgctcATCCTG
>XM_039811513.1
GAGATGCCGGAGAGTCACCGCCAGCCGGCGACCGAGCTGCCGAACAGCCGGTGAAGACTGAAGCTGCTGCAGACGGCGACGCCAAGCCTTCAACCACAACCACCGagagacacatctCCATCCAAACTAAACTGGAAGGCCTCGAGGGGCTGGTGGACCTGAATGGTGCGGGACGTAAGTCGTGTCCTCTGTGTCCCgaggagaagtttaaagcctgCTACAGCCACAAGCTCCGCAGACACCTGCAGAACCTCCACTGGAAAGTCTACGTGGAGTTCGAAGGCCAGAGGATGTGCATCTGCCACCTGCCCTGCAGAAACCTGAAGCCCAGCTCCAGTGGAGATCAGGCCTCGGGGAGACACGTGGCCCACTACCACTGCGTGGTGTGCTCTGTCACCATCGCCCGTAAGACGGACATGGTCAGCCACCTGAAGCGACACGTCAACAAAGGAGAGACCGAGGCCAGCTACTCCGGGAGCTCAGACGTGCCGTTTGACGAGCCGGCTCCGTCTGGCCAGGCGTATGAAATCATGAAGGAACTGGGAACCAACGTTCAGCTCCTCCCGAACCACACCACGCCGCAGAAGAGCGACACCTACTTCAACCGCAAGATGAAGACCAACAGgcagCTGGTGTTCTGTTCGCTGGCGGTTCTGGCGGAGGAGAGGAACCCGATCGAGTGTCTGGATGCTTTCGGAGCCACAGGGATTATGGGCCTCCAGTGGGCGAAGCACCTTCGTAACGCCGTCAAAGTGACCATAACCGATATCAGCGACACGTGCGTGAAAATGATCAAAGAGAACTGCGAGCTCAACAACATCCGGGTGGACGGCGGCTCACGAGGCCCCCGGGGGCCCGACGGGGCGACCAGCGAAGTGGAGGGATCGCCCATCGCTACGGTGGAGGTCGCCAAGATGGACGCCAACGTCACCATGCACCTGTGGCCCTTTGACTACATTCACTTGGATCCGTTCGGGACGGCCGTGAACTACCTGGACGCTGCCTTCAGGAACGTGCGTAACCTGGGCATCGTCTCGGTGACGTCCACAGACACGAGCTCTCTGTACTCCAAGTCTCCCAACGTCACGCTGCGTCACTACGGCTGTCACATCGTCCGCACCGAGTACTACAAAGAGCTGGCTGCTCGCATGGTGGTCGCCACCGTGGCCCGGGCGGCGGCTCGCTGTAACAAAGGTATCGAAGTCCTGCTGGCGGTGGCGTTGGAGCATTTCGTCCTGGTGGTGGTGAGAGTTCTCCGAGGTCCCACGCAGGCCGACGAGTCGGCCAAGAAGTTACGGAAACTGCTCCACTGTCAGTGGTGTGAGGAGAGAGTCTTCCTCAGACAGGGAACCATGGTGGACGACTCGCTGCCCTGTAACTGTCATGGAAGTTTGCCTGGAAGGACTGCGGTGCAGCTGGGGCCGTTATGgtgtggtCCTCTGTTTAATATCGTccttgagggggggggggtgACAACACAAGTTTGTAAAAGATGGAGTCACTGCTGGGTTCCCTCTCAGTTTAGTTTTTCCTGTCCAGCTCTAATGTTCGGTCTCTCTCCAGCGAAGAGGAAGTCGGGAGACGAGTCGGGGAACGTAGTGAAGAAGATGAAGTCCGATGCGTCTCTGGATCACCCGCCCTTCTACTACAGCATCCACCGCCACAGCATCAGAGGCATGAACATGCCCAAGTTGAACAAGTTTCTTCAGTACCTGACGGAGGCCGGCTTCAGGGTGAGTCGGACTCACTTCGACCCGACGGGCGTTCGAACCGACGCCACGCTGGAGCAGTTTAAGTCTGTCCTCACCAAGTACAGCGTCCCCACGTACACCAACGCCAACGCCGCGCAGAGCAGCGCGAGCGCCGAGACGACCCAGTGAGAGAAACGAGAGCAGAAAATCATTCACACGAAATCATCCGCTCATCTGGTTTCTACTGTTTCTGTGTCACCTGAACAAAGTTCTGACTGCACTGATGTCTGATGCTTTAACTAGAACTAAGTAGAAACTCTTTAATCAAACCAAAACTGGTGAGGATTGCCTTTTGCTAAAACCGCACACCAAACTGATCCTGCAGCACGGATGATGTttctctatttatttcagatttctctttttatttcattacttgctgatttattgtctttttttctgtttgctcATCCTGTCTTctaaaaacatattaaaaatcGGTCTGCGAAGCCTGAATATCTCA

Function

symbol description
trmt1l Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to be involved in tRNA N2-guanine methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in nucleus. Orthologous to human TRMT1L (tRNA methyltransferase 1 like).

NR:

description
PREDICTED: TRMT1-like protein

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125908 False 603 TUCP 0.49 2 4711561 4713185
XM_039811513.1 True 2214 mRNA 0.56 14 4685224 4713233

Neighbor

gene id symbol gene type direction distance location
LOC120565686 LOC104953734 coding upstream 23039 4657761 ~ 4662185 (+)
LOC120565681 NA coding upstream 82071 4599472 ~ 4603153 (+)
LOC120565674 NA coding upstream 165631 4515052 ~ 4519593 (+)
LOC120565669 NA coding upstream 241700 4439340 ~ 4443524 (+)
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 265443 4408643 ~ 4419781 (+)
niban1a LOC104958505 coding downstream 1422 4714655 ~ 4784151 (+)
mettl11b mettl11b coding downstream 139715 4852948 ~ 4873356 (+)
gorab gorab coding downstream 221528 4934761 ~ 4946307 (+)
prrx1b prrx1 coding downstream 253326 4966559 ~ 5000440 (+)
LOC120566192 NA coding downstream 311277 5024510 ~ 5201875 (+)
G93308 NA non-coding upstream 78431 4592376 ~ 4606793 (+)
G93286 NA non-coding upstream 179250 4500549 ~ 4505974 (+)
G93288 NA non-coding upstream 183172 4496053 ~ 4502052 (+)
G93293 NA non-coding upstream 217913 4461129 ~ 4467311 (+)
G93294 NA non-coding upstream 219790 4460271 ~ 4465434 (+)
G93332 NA non-coding downstream 32047 4745280 ~ 4750169 (+)
G93335 kifap3 non-coding downstream 85178 4798411 ~ 4805232 (+)
G93345 NA non-coding downstream 180085 4893318 ~ 4893706 (+)
G93348 NA non-coding downstream 220838 4934071 ~ 4993591 (+)
G93349 NA non-coding downstream 225915 4939148 ~ 4939410 (+)
LOC120565391 NA other upstream 371709 4284755 ~ 4313515 (+)
G93150 NA other upstream 467398 4174602 ~ 4217826 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 861442 3714919 ~ 3823782 (+)
G92848 NA other upstream 1078399 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 1089836 3540034 ~ 3595388 (+)
G93613 NA other downstream 1322136 6035369 ~ 6051520 (+)
G93638 NA other downstream 1488852 6202085 ~ 6214017 (+)
rhpn1 rhpn1 other downstream 1641659 6354892 ~ 6381598 (+)
G93938 NA other downstream 2636577 7349810 ~ 7350587 (+)
LOC120565294 pycrl other downstream 3165686 7878919 ~ 7890177 (+)

Expression


Co-expression Network