rhpn1 (rhpn1)


Basic Information

Item Value
gene id rhpn1
gene name rhpn1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6354892 ~ 6381598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU126420
AGCGGAGGAGGTGCTAGCATAATGTAATGAGTTGAAGCAGGGTTGTTTTGAGGAGTAAAAAGTTGTTTATTTCACTCTACGGTTGACTGAACATTGGACCTTTGTGTTTACTTGGAGTTATACAACGCTGGGAGAAATGTAGGGGCTTTTCGGCCGCATTTGTCTTTGCCTCACGATGGAGGAACCTGCGACAAGAGAGTTGGAGATGTCCCTGTCAGACGGTACCTCGGACGACGAAATGCCCTCAACGTTACCCGCAGAGGGCAGCCACAGTGGGAGCATCCGAaagGGATGTGATCCTTTCGCCCAGACTCAGCGCAGTAAGCTGCAGCACCGGCGAGCTCGCATCAACCAGCAGATCAACAAGGAGATGCGCATGAGAGCCGGAGCAGAGAACCTGTTCAGAGCAACAACCAACAACAAGGTGAAGGAGACGGTGGCTCTGGAGCTCAGCTTCGTTAACTCCAACCTGCAGCTACTCaaagaggagctggaggagctCAACAGCAACATGGAGGTCtaccagacagacagTGAGGCTATCAACGTTCCCATGATCCCACTCGGATTAAAAGAAACCAAAGAGGTGGACTTCACAGTTTCTATCCAGGACTTCATCTGTGAGCACTACGGAGAGGACAGCTCTCTGTACGACAAGGAGATTAAAGAGCTTATGGAGCTCAGACAGGTTAATAAATGCACTCCTACAACTTCATACAAAACTAACTATAATCGTGTTTGGTATAACATCTGTTTTTCATTATG
>XM_039812355.1
AAGCAAGCGGAGGAGGTGCTAGCATAATGTAATGAGTTGAAGCAGGGTTGTTTTGAGGAGTAAAAAGTTGTTTATTTCACTCTACGGTTGACTGAACATTGGACCTTTGTGTTTACTTGGAGTTATACAACGCTGGGAGAAATGTAGGGGCTTTTCGGCCGCATTTGTCTTTGCCTCACGATGGAGGAACCTGCGACAAGAGAGTTGGAGATGTCCCTGTCAGACGGTACCTCGGACGACGAAATGCCCTCAACGTTACCCGCAGAGGGCAGCCACAGTGGGAGCATCCGAaagGGATGTGATCCTTTCGCCCAGACTCAGCGCAGTAAGCTGCAGCACCGGCGAGCTCGCATCAACCAGCAGATCAACAAGGAGATGCGCATGAGAGCCGGAGCAGAGAACCTGTTCAGAGCAACAACCAACAACAAGGTGAAGGAGACGGTGGCTCTGGAGCTCAGCTTCGTTAACTCCAACCTGCAGCTACTCaaagaggagctggaggagctCAACAGCAACATGGAGGTCtaccagacagacagTGAGGCTATCAACGTTCCCATGATCCCACTCGGATTAAAAGAAACCAAAGAGGTGGACTTCACAGTTTCTATCCAGGACTTCATCTGTGAGCACTACGGAGAGGACAGCTCTCTGTACGACAAGGAGATTAAAGAGCTTATGGAGCTCAGACAGGTTAATAAATGCACTCCTACAAGGGGCCCGGGGGGGCCGGGACTTCTGATGGAGTAACTACAACCATGGCTTACCATGGACCAGCGCTTCTTCCCTCAACACAGGAACCTGGGTGTGCACTTTCACTGGTACGACTCTCTGACAGGCGTCCCATCGTGTCAGCGTACGCTGGCCTTTGAAAAAGGAAGTGTGTTGTTCAACATCGGTGCCCTGTACACACAGATCGGAGCACGGCAGGACCGCTCTGTAACAGCTGGCATAGACCGAGCTGTAGATGCCTTTCAGAGAGCTGCCGGTGCATTTAATTACCTTAAAGAGAATTTCTCCAACGCTCCCAGTCTGGACATGAGTGGTCCGTCGCTCTGCATGCTGGTACGGCTAATGATTGCCCAGGTGcaggagtgtgtgtttgagcgtGTCACACTCACCACACAGGACACGCACTTCACTTCCCAACTCCGCCTGGCACAAGAGGCTGCACGGGTGTCAGACGTCTACATTTTAGTGCAGCAGACCATGACGCAGCCTCTGATGAAGGACTACGTGCCGTTTTCTTGGGCCTCCATGGTTCAGGTCAAATCTGAACACTTCCGCGCTCTCTCGCACTACTACGCTGCTGTTGCACTCTGTGATCACACATTGTCTGCTGAGGAGGACGAGGGTGATGAGGAAGCAGAGAAGGCTTTCCTCCAGTTCTATGTCAACGTTCCTGCAGGGCCACCACTCAGCCAGGTGTTACGAGACCCTGAACAAAGAAGAAAGCTTGGTAAAGCTCACCTGCGGCGTGCAGTAATGAGACATGAGGAGGCCATGCGTGTCCACAGTCTGTGTAAGATCCTGAGGAAGATGGACATCCTGCAGGACGtgctgtctctcacacacaaacgctCTTTGGACAAGTACTCTGAGCTGGACAGAGAGGACGACTTTGATGAAACTGCAGAGGCTCCAGAGATACAGTCTCAAACCCATCAGAAACCCGAAATCACTCCAATCAACTTCTCTACAGTCCAAGTTACTGATATCTTCCAAAGACTGGGGCCTCTGTCAGTGTTTTGTGCACGTGCTCGCTGGGGTCCGGTACGTGTGATCTGCCTgcagaggagagagggcggACTGGGTCTCACGCTCAGAGGAGACTCCCCTGTCCTGGTGGCTGGAGTGGTGCCTGGAGGCTGTGCAGCGGAGGCCGGCTTAAGAGAAGGAGACTACATAGTAGCGGTGGACGGACAGGACTGTAAATGGGCCAAACATGGCGAGGTGGTCCACATGCTAAAGAGCTGCAGCGACAGAGGGGCGGAGCTCAGCGTGGTCACATTACACTCCCATGACACACAGgtGGAGAGGAGGGCCGTCATGCTGTCTCTAGGCAGCGATAAGGAAAACACTCGCCAGCGTCTGCTGGGTGGAGCTAAGGGCCAGAGCTCCGCCTCCTTGTTGAACTGgaacaggaagaagaagagggagggagggggggtcacTAAGAGACTAGGAAGCACTTTCAGTCTGTCGTTCGGGAACATCCGAGACACGGAGGCCATGTACTGAGACACGAGGGCAGAGGAACCACTCAGGGAATCACGGCAGCGGCGCACGAGGTACGATCAGGACCGCGTTCAGACTGACAGTAGTGCTGCACCAGGAAGCATCAGCAGGGGATGCTGCCGCAGAGAGCCCCGACACAAAAGCACAAGGTTAGTCCAGTAAGTTGTTCCTGGCTCCAGCACAGTCCAATCCAATATGTGGaagcacacatacaggtagAAAACCTTCTAACATGTAGCTTTTTGCAAATTTTTACCTTGCAAGAGTGACGAGCTAACTATTTTTGCCATGATAATTTTCCAGAGTTGGACAATCTGCCTCTGAGGAGTAGCAGTACTCTGTGTAGTGATGTGTACTTCACAGGAGTCTAAATGTGCGTTGAGACAGAACTCAAGGAAAGGTTTAGATGCAGgactaggattgggcatcgagaaccgattcttACTTGGAATCtgttcaaaaattacgattccagtggaatagtttctttattggaattgtttggaGTCCtttagaggatttggtttcaaattcGATCATCGCTTCCCAATTTAATATGAGCaaattttggtttccgtagcagccaggcgcttgtgttgcagccttggagcacagtaagcggcgctctagtgtggctttattatacgttgaa

Function

symbol description
rhpn1 Predicted to act upstream of or within signal transduction. Orthologous to human RHPN1 (rhophilin Rho GTPase binding protein 1).

NR:

description
rhophilin-1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126420 False 765 TUCP 0.49 6 6354897 6368354
XM_039812355.1 True 2890 mRNA 0.52 16 6354892 6381598

Neighbor

gene id symbol gene type direction distance location
LOC120565762 LOC102311032 coding upstream 9811 6335751 ~ 6345081 (+)
tut4 zcchc11 coding upstream 64773 6262220 ~ 6290119 (+)
LOC120565748 NA coding upstream 283645 6067683 ~ 6071247 (+)
LOC120565642 tspan1,LOC104930558 coding upstream 325699 6002811 ~ 6029193 (+)
mast2 mast2,LOC102294889,LOC102799744 coding upstream 868007 5211170 ~ 5486885 (+)
cyldl NA coding downstream 246044 6627642 ~ 6641120 (+)
ghrhrb LOC100710271,LOC101475240,LOC103357300 coding downstream 290473 6672071 ~ 6723277 (+)
si:ch211-191a24.4 LOC104966872 coding downstream 583949 6965547 ~ 6971300 (+)
si:ch211-191a24.3 LOC103358916 coding downstream 625572 7007170 ~ 7067934 (+)
igfbp3 LOC103358919 coding downstream 726551 7108149 ~ 7127272 (+)
G93644 NA non-coding upstream 112734 6241195 ~ 6242158 (+)
G93640 NA non-coding upstream 139157 6215068 ~ 6215735 (+)
G93609 NA non-coding upstream 389833 5964812 ~ 5965059 (+)
G93541 NA non-coding upstream 694087 5596770 ~ 5660805 (+)
G93437 NA non-coding upstream 862435 5488294 ~ 5492457 (+)
G93700 atpaf1,LOC102780159 non-coding downstream 8558 6390156 ~ 6398997 (+)
G93713 NA non-coding downstream 207605 6589203 ~ 6589653 (+)
G93758 NA non-coding downstream 454993 6836591 ~ 6836818 (+)
G93790 NA non-coding downstream 494553 6876151 ~ 6876493 (+)
G93791 NA non-coding downstream 498205 6879803 ~ 6880081 (+)
G93638 NA other upstream 140875 6202085 ~ 6214017 (+)
G93613 NA other upstream 303372 6035369 ~ 6051520 (+)
trmt1l trmt1l other upstream 1641659 4685224 ~ 4713233 (+)
LOC120565391 NA other upstream 2041377 4284755 ~ 4313515 (+)
G93150 NA other upstream 2137066 4174602 ~ 4217826 (+)
G93938 NA other downstream 968212 7349810 ~ 7350587 (+)
LOC120565294 pycrl other downstream 1497321 7878919 ~ 7890177 (+)
LOC120565614 NA other downstream 1514547 7896145 ~ 7905247 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other downstream 1855772 8237370 ~ 8286436 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other downstream 2765564 9147162 ~ 9168877 (+)

Expression


Co-expression Network