Gene
RNA
| Item | Value |
|---|---|
| gene id | G106793 |
| gene name | clp1,LOC102795812 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053121.1 |
| NCBI id | CM020918.1 |
| chromosome length | 40300294 |
| location | 21286314 ~ 21287781 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| clp1 | Enables polyribonucleotide 5'-hydroxyl-kinase activity. Acts upstream of or within brain development and spinal cord motor neuron differentiation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage factor complex and tRNA-intron endonuclease complex. Is expressed in brain and motor neurons. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 10. Orthologous to human CLP1 (cleavage factor polyribonucleotide kinase subunit 1). |
| description |
|---|
| PREDICTED: polyribonucleotide 5'-hydroxyl-kinase Clp1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU143431 | True | 1320 | lncRNA | 0.47 | 2 | 21286314 | 21287781 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| smtnl1 | smtnl1,LOC106942261 | coding | downstream | 47791 | 21233306 ~ 21238523 (-) |
| LOC120567254 | NA | coding | downstream | 55939 | 21220217 ~ 21230375 (-) |
| LOC120566637 | ctnnd1 | coding | downstream | 66883 | 21196765 ~ 21219431 (-) |
| LOC120566536 | NA | coding | downstream | 89650 | 21187612 ~ 21196664 (-) |
| crybb1l1 | LOC103354769,LOC101482390,LOC100705848,LOC102798478 | coding | downstream | 107542 | 21176882 ~ 21178772 (-) |
| tmx2a | tmx2 | coding | upstream | 14289 | 21302070 ~ 21308135 (-) |
| slc43a1a | slc43a1 | coding | upstream | 26513 | 21314294 ~ 21348934 (-) |
| clcf1 | clcf1 | coding | upstream | 79307 | 21367088 ~ 21381178 (-) |
| zgc:113229 | NA | coding | upstream | 128913 | 21416694 ~ 21423613 (-) |
| tbc1d10c | tbc1d10c,LOC106938142 | coding | upstream | 141713 | 21429494 ~ 21438163 (-) |
| G106784 | NA | non-coding | downstream | 29667 | 21252905 ~ 21256647 (-) |
| LOC120566633 | NA | non-coding | downstream | 122251 | 21149902 ~ 21164063 (-) |
| LOC120566356 | NA | non-coding | downstream | 212401 | 21070141 ~ 21073913 (-) |
| G106645 | NA | non-coding | downstream | 286103 | 20999959 ~ 21000211 (-) |
| LOC120567470 | NA | non-coding | downstream | 325422 | 20955337 ~ 20960892 (-) |
| G106802 | med19 | non-coding | upstream | 24582 | 21312363 ~ 21314127 (-) |
| G106813 | NA | non-coding | upstream | 72535 | 21360316 ~ 21408289 (-) |
| G106825 | ssrp1 | non-coding | upstream | 101831 | 21389612 ~ 21401183 (-) |
| G106848 | NA | non-coding | upstream | 153043 | 21440824 ~ 21443089 (-) |
| G106852 | ran,LOC105022884 | non-coding | upstream | 155616 | 21443397 ~ 21446726 (-) |
| LOC120566634 | LOC104961169,LOC103354768,LOC101069382 | other | downstream | 98661 | 21178852 ~ 21187653 (-) |
| G106728 | mif | other | downstream | 155344 | 21127838 ~ 21130970 (-) |
| LOC120566885 | ppp2r2c | other | downstream | 176247 | 21075757 ~ 21110067 (-) |
| G106443 | LOC103366336,LOC104937910,LOC104959671 | other | downstream | 1052390 | 20230908 ~ 20233924 (-) |
| fgf18a | fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 | other | downstream | 1304681 | 19971833 ~ 19981633 (-) |
| G106988 | NA | other | upstream | 502472 | 21790253 ~ 21790725 (-) |
| G107015 | NA | other | upstream | 831904 | 22119685 ~ 22120067 (-) |
| G107117 | NA | other | upstream | 1403379 | 22691160 ~ 22692831 (-) |
| G107235 | rom1,LOC103366586,LOC102779683 | other | upstream | 1703206 | 22990987 ~ 22993229 (-) |
| trpt1 | trpt1,LOC102777684 | other | upstream | 1804784 | 23092565 ~ 23177026 (-) |
