G106989 (klhl4,LOC104919997)


Basic Information

Item Value
gene id G106989
gene name klhl4,LOC104919997
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21791805 ~ 21792629 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU143776
ACCAAgtccatgtctgtgtgttgacaTGGGGGGCATGGTGGACCACACTTTATTGATCGGATTGTAGCACTCCACCATATTGGACGTCTTGAGTCCATCTCTCCCTCCGACCACATACAGCTTGTTGTCTATAACTGCGACACCAAACTGGAGCCGGCGTCCGTTCATGACTCCAACCTGGACCCAAGTGTTAGTCCGCAGGTCATACTTCTCAATGGTGGTGGAGCCTAAAACcacaacaaatattaacaatttAAATAAACTGCGTTACTGTGCATTTATAACTACTGCGTACGGGCCACACCTTTGGTAGCATCCATCCCTCCTACAGCATAAAGTGCGCCCACAGTGGACTTTCTAGGTTTGGTTCTTGGGCTCTGAAACATGGGACGTCTCTCAGGCAGGAGATGGTACTTCATGGCCTCCATCAGCAGCTTTTGGCATTCCAGGTCATCAGAGAACATCTTGTTGTTTTCAAGATCTGCAAGGAGCTACATTTCAAGGAATCTCATTAATAGACTACAtcatgaaatgtaatgtgtagaAAAAGTGCCAAATGTATACAGTATCTATACAAATCACCTTTGAGGACATGTAATGAAAAGCCTGTTAATGCAAAACCAGGTTAATCTCATGTAGAATAAAGAGTGAAGTCTTAAATAACAGATAATCCCATGTAACACAAAGACCCTTGCACATAAATAGATCTTTAGATGTGGTAACAGCAAGTCTTTAAATTAATACATGATTAATACTTCATAGGGTTTATGttaaatgcaggaaatgaaccATTTGTAGCCACAGTGGTGATATCTTGTATCTGTT

Function

symbol description
klhl4 Is expressed in intermediate cell mass of mesoderm. Orthologous to human KLHL4 (kelch like family member 4).

NR:

description
PREDICTED: kelch-like protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143776 True 825 lncRNA 0.42 1 21791805 21792629

Neighbor

gene id symbol gene type direction distance location
si:ch211-175m2.5 LOC104942593,LOC103358585,LOC101471829 coding downstream 94722 21692687 ~ 21697083 (-)
LOC120566697 NA coding downstream 170197 21619863 ~ 21621608 (-)
LOC120566537 LOC104958700,LOC103358614 coding downstream 281802 21507069 ~ 21510003 (-)
LOC120566376 NA coding downstream 291165 21494894 ~ 21500640 (-)
tbc1d10c tbc1d10c,LOC106938142 coding downstream 353642 21429494 ~ 21438163 (-)
pcdh11 LOC104946172,LOC103356418,LOC101473199 coding upstream 92143 21884772 ~ 22015753 (-)
tsc22d3 LOC103390732,LOC104954424,LOC101161414,LOC103356417,LOC102306956,LOC102786303 coding upstream 582637 22375266 ~ 22408211 (-)
slc16a2 slc16a2 coding upstream 926265 22718894 ~ 22743071 (-)
LOC120567161 NA coding upstream 985776 22778405 ~ 22783217 (-)
dpf2l dpf2 coding upstream 1037781 22830410 ~ 22840569 (-)
G106959 eef1g non-coding downstream 66113 21700949 ~ 21725692 (-)
G106872 NA non-coding downstream 300984 21490056 ~ 21490821 (-)
G106852 ran,LOC105022884 non-coding downstream 345079 21443397 ~ 21446726 (-)
G106848 NA non-coding downstream 348716 21440824 ~ 21443089 (-)
G106813 NA non-coding downstream 383516 21360316 ~ 21408289 (-)
G106990 NA non-coding upstream 3182 21795811 ~ 21796361 (-)
G106991 NA non-coding upstream 5594 21798223 ~ 21800003 (-)
LOC120567355 NA non-coding upstream 61779 21854408 ~ 21857861 (-)
G106994 NA non-coding upstream 88008 21880637 ~ 21880861 (-)
G107020 NA non-coding upstream 518991 22311620 ~ 22311843 (-)
G106988 NA other downstream 1080 21790253 ~ 21790725 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 604152 21178852 ~ 21187653 (-)
G106728 mif other downstream 660835 21127838 ~ 21130970 (-)
LOC120566885 ppp2r2c other downstream 681738 21075757 ~ 21110067 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 1557881 20230908 ~ 20233924 (-)
G107015 NA other upstream 327056 22119685 ~ 22120067 (-)
G107117 NA other upstream 898531 22691160 ~ 22692831 (-)
G107235 rom1,LOC103366586,LOC102779683 other upstream 1198358 22990987 ~ 22993229 (-)
trpt1 trpt1,LOC102777684 other upstream 1299936 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other upstream 1337080 23129709 ~ 23134785 (-)

Expression


Co-expression Network