trpt1 (trpt1,LOC102777684)


Basic Information

Item Value
gene id trpt1
gene name trpt1,LOC102777684
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23092565 ~ 23177026 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144149
tgttgTTATTCATAAGTttttgtgtttacatgtgttttTCTACTCATTGCTGTTGATCCTGTGGCTGCTGACAATGAGACTGCAGCTTTGGACAAAGCAAGGCTTTCTATCCGAATTGACAGGAACTCTGGATACTGTGAGGCGAAACAGAAAAGTTGCTTCTGGCTGATGCAACGGTTGATTTTGCATTGCCATGAGTTTGAGTGTCAAGCTTGCTGATCCTGGACCAGATGTCTAGCAGTTTGGACAAGTAGCAGTCCATTCTGAAGTAAAGGGGAAGTCAGCATGAGGACCACCAGGGtcttgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggg
>TU144153
GAACGTTTGCTTGCAAGAGTTTACGGAGtttaccatagacagtatataagaagttTACCACTGACCACAAGTGTGATCTTGTGTGACGTTTCGCTGAATTAAAATCACTAGGCTACAATTTGTAGCGGAATATCCAGCAGCTTCAAATCATGATTTGAATTCCTGAGCTGCCTGCATTTAAATGGACAgtgacagaggaggaagaggagggagaggaaggagaggaaggagaggaaatcGTGGTGGAGAAGACAGAGATGTCCGTCTGTCTAAATCCATGTCTTATGCTCTTCGCCATGGAGCCAACCAGATGGGTCTTCACATGGGTTCAGATGGCTTCATGTTTGTGGAGGAACTCCTGGCTCACCCACAGTTCCTCTCATACTCATTGGAAGATGTCGAAAGAGTCGTGGCCACAAATGACAAGCAGCGCTTTAAGCTTCTTCCCCACCCGGAGGATGGACGCCTGCAGATTCGAGCCAGTCAGGGCCATTCAGTACAGGT
>XM_039812885.1
GGCGAATAAACAGGAAGTGGGAAGCTGAACGTTTGCTTGCAAGAGTTTACGGAGtttaccatagacagtatataagaagttTACCACTGACCACAAGTGTGATCTTGTGTGACGTTTCGCTGAATTAAAATCACTAGGCTACAATTTGTAGCGGAATATCCAGCAGCTTCAAATCATGATTTGAATTCCTGAGCTGCCTGCATTTAAATGGACAgtgacagaggaggaagaggagggagaggaaggagaggaaggagaggaaatcGTGGTGGAGAAGACAGAGATGTCCGTCTGTCTAAATCCATGTCTTATGCTCTTCGCCATGGAGCCAACCAGATGGGTCTTCACATGGGTTCAGATGGCTTCATGTTTGTGGAGGAACTCCTGGCTCACCCACAGTTCCTCTCATACTCATTGGAAGATGTCGAAAGAGTCGTGGCCACAAATGACAAGCAGCGCTTTAAGCTTCTTCCCCACCCGGAGGATGGACGCCTGCAGATTCGAGCCAGTCAGGGCCATTCAGTACAGGTGATGGATTTGGAGCTGAAACCGGTCATAGCTGGTTCTCCAGACTGCCCTGCTGAGGCCGTTCATGGCTCCTACCTCCGCAACTGGAGCGCCATCCAGCAGCTGGGCCTGAGCCGCATGAGGAGGACACACATCCACCTGGCACCAGGCCTGCTAGGGGAGAAAGCCGTCATCAGCGGCATGAGGAAAGACTGTGATCTAGCCGTGTATATTGATGTCCCCAAAGCTCTCGCTGATGGTATTGAGTTCTTCTGGTCAGATAATGGCGTGTTGCTGACAGCAGGCGACGCAGAGGGAAAACTTCTCCCTAAATACTTCAGCCGAGCCTTAAGACTGAGACCCACAAGGAGCATCCTACCACTGCAGTAGCACCAGAGAATACTGTTCTGTCAATGGTCATAGCAGGAAACTGTGTGCTGTGACTGTGCTAGCAACCCATGGTTGGTTGATGCTTAGCCTAGTTCCCTTGGTAACACTTGTTTGGCAGGAGCATCCTAGTGAGGTGATTGTAGTTAGCAATACGAGTATCCATTCAGAAATCATCCGAAATGAGACTAAATTGGTAGACTTTTCATTTCTATGTCATTGAAAGGATCAGGACGGCTTTAGGGAAGCATACTTTACTCTTATATGACAATTAATTCAACTTATGCTGGcaaatctcactttttatttaCAAGTATAGAGGCTTTGTCTTCTCCATTGTAAGTGCTAAATAAACTATAGCACACATTAACTACCAAGATAATTTCACCACGCAGTTGTAAAATATATAACCCTGGTCACAAACCGACACACTGGCTGCTGGCAGCCGGGCCTAGATATATTGTATGTGTGAGGAGTCACTTGACTGAGTATGGGAAAGCAGAGGATACAGACACTGTGGTTTTAGTTAACGGACTTCTGTAACAGTTTCTTGTAagatatagacacacacacagcatgtgaGGGGAGATAAACGGTTAGAAGCTTCCTgtgtgaaaaaacaacaacagaaatcCCACCATATGTCACGGACATAAGGAGTGAAGACAACAGAGAATTAAAAGGAAattgctgtatttattttattattttattttagtttgttgTTATTCATAAGTttttgtgtttacatgtgttttTCTACTCATTGCTGTTGATCCTGTGGCTGCTGACAATGAGACTGCAGCTTTGGACAAAGCAAGGCTTTCTATCCGAATTGACAGGAACTCTGGATACTGTGAGGCGAAACAGAAAAGTTGCTTCTGGCTGATGCAACGGTTGATTTTGCATTGCCATGAGTTTGAGTGTCAAGCTTGCTGATCCTGGACCAGATGTCTAGCAGTTTGGACAAGTAGCAGTCCATTCTGAAGTAAAGGGGAAGTCAGCATGAGGACCACCAGGGtcttgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaaaggcTGTGGAAAAACTTAGATGGACTGACGAGGCGGGTTgtaacacattcacacatgaaCAGAATATCTTATTTTGTCGTTGTTGTGTTTGCCTGATTGCGCCATAAAATCCAATTCCACATGGTT
>XM_039812886.1
GGCGAATAAACAGGAAGTGGGAAGCTGAACGTTTGCTTGCAAGAGTTTACGGAGtttaccatagacagtatataagaagttTACCACTGACCACAAGTGTGATCTTGTGTGACGTTTCGCTGAATTAAAATCACTAGGCTACAATTTGTAGCGGAATATCCAGCAGCTTCAAATCATGATTTGAATTCCTGAGCTGCCTGCATTTAAATGGACAgtgacagaggaggaagaggagggagaggaaggagaggaaggagaggaaatcGTGGTGGAGAAGACAGAGATGTCCGTCTGTCTAAATCCATGTCTTATGCTCTTCGCCATGGAGCCAACCAGATGGGTCTTCACATGGGTTCAGATGGCTTCATGTTTGTGGAGGAACTCCTGGCTCACCCACAGTTCCTCTCATACTCATTGGAAGATGTCGAAAGAGTCGTGGCCACAAATGACAAGCAGCGCTTTAAGCTTCTTCCCCACCCGGAGGATGGACGCCTGCAGATTCGAGCCAGTCAGGGCCATTCAGTACAGGTGATGGATTTGGAGCTGAAACCGGTCATAGCTGGTTCTCCAGACTGCCCTGCTGAGGCCGTTCATGGCTCCTACCTCCGCAACTGGAGCGCCATCCAGCAGCTGGGCCTGAGCCGCATGAGGAGGACACACATCCACCTGGCACCAGGCCTGCTAGGGGAGAAAGCCGTCATCAGCGATGGTATTGAGTTCTTCTGGTCAGATAATGGCGTGTTGCTGACAGCAGGCGACGCAGAGGGAAAACTTCTCCCTAAATACTTCAGCCGAGCCTTAAGACTGAGACCCACAAGGAGCATCCTACCACTGCAGTAGCACCAGAGAATACTGTTCTGTCAATGGTCATAGCAGGAAACTGTGTGCTGTGACTGTGCTAGCAACCCATGGTTGGTTGATGCTTAGCCTAGTTCCCTTGGTAACACTTGTTTGGCAGGAGCATCCTAGTGAGGTGATTGTAGTTAGCAATACGAGTATCCATTCAGAAATCATCCGAAATGAGACTAAATTGGTAGACTTTTCATTTCTATGTCATTGAAAGGATCAGGACGGCTTTAGGGAAGCATACTTTACTCTTATATGACAATTAATTCAACTTATGCTGGcaaatctcactttttatttaCAAGTATAGAGGCTTTGTCTTCTCCATTGTAAGTGCTAAATAAACTATAGCACACATTAACTACCAAGATAATTTCACCACGCAGTTGTAAAATATATAACCCTGGTCACAAACCGACACACTGGCTGCTGGCAGCCGGGCCTAGATATATTGTATGTGTGAGGAGTCACTTGACTGAGTATGGGAAAGCAGAGGATACAGACACTGTGGTTTTAGTTAACGGACTTCTGTAACAGTTTCTTGTAagatatagacacacacacagcatgtgaGGGGAGATAAACGGTTAGAAGCTTCCTgtgtgaaaaaacaacaacagaaatcCCACCATATGTCACGGACATAAGGAGTGAAGACAACAGAGAATTAAAAGGAAattgctgtatttattttattattttattttagtttgttgTTATTCATAAGTttttgtgtttacatgtgttttTCTACTCATTGCTGTTGATCCTGTGGCTGCTGACAATGAGACTGCAGCTTTGGACAAAGCAAGGCTTTCTATCCGAATTGACAGGAACTCTGGATACTGTGAGGCGAAACAGAAAAGTTGCTTCTGGCTGATGCAACGGTTGATTTTGCATTGCCATGAGTTTGAGTGTCAAGCTTGCTGATCCTGGACCAGATGTCTAGCAGTTTGGACAAGTAGCAGTCCATTCTGAAGTAAAGGGGAAGTCAGCATGAGGACCACCAGGGtcttgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaaaggcTGTGGAAAAACTTAGATGGACTGACGAGGCGGGTTgtaacacattcacacatgaaCAGAATATCTTATTTTGTCGTTGTTGTGTTTGCCTGATTGCGCCATAAAATCCAATTCCACATGGTT

Function

symbol description
trpt1 Predicted to enable tRNA 2'-phosphotransferase activity. Predicted to be involved in tRNA splicing, via endonucleolytic cleavage and ligation. Orthologous to human TRPT1 (tRNA phosphotransferase 1).

NR:

description
tRNA 2'-phosphotransferase 1 isoform X2

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K10669 TRPT1, TPT1; 2'-phosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU144149 False 360 lncRNA 0.46 2 23092565 23173418
TU144153 False 504 TUCP 0.48 3 23175691 23177000
XM_039812885.1 True 2185 mRNA 0.45 7 23172848 23177026
XM_039812886.1 False 2128 mRNA 0.45 6 23172848 23177026

Neighbor

gene id symbol gene type direction distance location
scyl1 scyl1 coding downstream 128611 22950544 ~ 22963954 (-)
LOC120566540 NA coding downstream 146637 22941936 ~ 22945928 (-)
ints5 ints5 coding downstream 152260 22935020 ~ 22940305 (-)
ganabb ganab coding downstream 158001 22919844 ~ 22934564 (-)
si:ch211-114c17.1 LOC103374192,LOC100701998,LOC102296932 coding downstream 173783 22910157 ~ 22918782 (-)
kcnk4a LOC104959797 coding upstream 89888 23266914 ~ 23282656 (-)
si:dkeyp-115e12.6 LOC105026731 coding upstream 108293 23285319 ~ 23308063 (-)
stx5a stx5 coding upstream 138812 23315838 ~ 23322957 (-)
vegfba vegfb coding upstream 151224 23328250 ~ 23344198 (-)
dnajc4 dnajc4 coding upstream 169161 23346187 ~ 23351569 (-)
G107220 NA non-coding downstream 118805 22928854 ~ 22973760 (-)
G107215 NA non-coding downstream 216106 22875496 ~ 22876459 (-)
G107160 NA non-coding downstream 236219 22856125 ~ 22856346 (-)
G107102 NA non-coding downstream 373795 22713037 ~ 22718770 (-)
G107097 NA non-coding downstream 407107 22683733 ~ 22685458 (-)
G107290 LOC105026702,LOC106604372 non-coding upstream 2666 23179692 ~ 23181717 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding upstream 65011 23242037 ~ 23263899 (-)
G107610 NA non-coding upstream 615028 23792054 ~ 23792502 (-)
G107667 NA non-coding upstream 1022473 24199499 ~ 24259346 (-)
LOC120566461 NA non-coding upstream 1111123 24288149 ~ 24381312 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 99336 22990987 ~ 22993229 (-)
G107117 NA other downstream 399734 22691160 ~ 22692831 (-)
G107015 NA other downstream 972498 22119685 ~ 22120067 (-)
G106988 NA other downstream 1301840 21790253 ~ 21790725 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 1904912 21178852 ~ 21187653 (-)
rnaseh2c rnaseh2c other upstream 7166 23184192 ~ 23187058 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 707562 23884588 ~ 23988901 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 1396415 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 1684944 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 2086146 25263172 ~ 25264864 (-)

Expression


Co-expression Network