LOC120566416


Basic Information

Item Value
gene id LOC120566416
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23855525 ~ 23865274 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU144527
CACGACTGTACAGCTGGTTGCTGAACCCGGTGGGTGGTGAGGAACACAGCACAGAGATGATGCACATCACGGAGGTCCAAACCATTCTGGCAATGCGGACAAGAATGTACGTCATTTTCGGGGCAGAAAAATCTACTGCCGGAGTCGGGCGAGCTACCCGACAAGGAGACTCGATCTTCAGGGGACACAGGAAGATGGCTGCTGACACCACTACAAATATCACTGCAATCAGGAACTTAGACcctgTGTGGAAGCCCTGGAAGACGAACGAGCACAGCAGGGTCAACGCCCCAACAGCACCAAACTGCAAGAAAGGAGCTGTGGCCTGCCGACAGGCCGACACGCACATCAGAAACACATGACGGACACAGGCAACTaagaacaaaacaacaacagacattTACATTATAATATTCCCACAAAAACTGGTCTCACTGTACCTGGAGTGAAAGAGGAACAGTTGGCAATTCATCTTTCCACTTGAGACAGATTCCTATGACCCCTAAAGTGATGAACATCACACCAAAAAATAGGAGGATCTgtgtagagaaaaaaaaaaaaaaaattcaataacTTGAACAGCCTCAATAGAGGATCCATGTTTGGAAATGTTCACAATACCTTGTGTAGCCAGTGTAAGTTGAGTGGTTCTTCTAAGGCAACTTGGAAGAGTGCAAAGAGCTGTAATGAATGAAACTAAATTATAAGAAATCTCTCATATTATATGGTTACATGGCTACAAGGCTAAACAAGTTATTTTATGTTTCTTATAGACTTCTAAACATCCAATCACATGCCAGTAATTAAACTCTCCTGTGACAATAAGGTATAATATTCTGCAACAATCAACACCACAGAATCAACACTATATTCTCACCAGCAGCAGAACGCAGTAGCTGGTTACCACTGCAGAAATGATGATCAGCACCATGAACCAGTTCACCCATCGTTTCAGTGTTTTGAAGCCCTCCCTGATAATAGAACAAAAGAGGGCAGCACAGGGTTAGCACtaataaagaaagagaagaaaaggaaagaaaagagaggattCTGGTCTTTTGTGCTCGATTCAATGTGGGCCGTTTGTGTTTGTGATCACTCACCAGTTAACATCCTCTCGGTCATTAAAAGTAACCAGACAGAAATACATCCAGCACAGGGAAAGCAGGCAGACCATAATGACAACTGAGAACCAACAGCATGCACGCTAGAATGATAAGAACAGGTGAAATATTATCCAGA
>XR_005640398.1
TGTACAGCTGGTTGCTGAACCCGGTGGGTGGTGAGGAACACAGCACAGAGATGATGCACATCACGGAGGTCCAAACCATTCTGGCAATGCGGACAAGAATGTACGTCATTTTCGGGGCAGAAAAATCTACTGCCGGAGTCGGGCGAGCTACCCGACAAGGAGACTCGATCTTCAGGGGACACAGGAAGATGGCTGCTGACACCACTACAAATATCACTGCAATCAGGAACTTAGACcctggtgagaaaaaaaaagtcaaacaataAGTGTGGAAGCCCTGGAAGACGAACGAGCACAGCAGGGTCAACGCCCCAACAGCACCAAACTGCAAGAAAGGAGCTGTGGCCTGCCGACAGGCCGACACGCACATCAGAAACACATGACGGACACAGGCAACTaagaacaaaacaacaacagacattTACATTATAATATTCCCACAAAAACTGGTCTCACTGTACCTGGAG

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144527 True 1242 TUCP 0.43 4 23855525 23865274
XR_005640398.1 False 467 lncRNA 0.50 4 23855531 23864478

Neighbor

gene id symbol gene type direction distance location
tex11 NA coding upstream 85337 23760077 ~ 23770188 (+)
lnx2b LOC103373828,LOC101477438,LOC102298784 coding upstream 170829 23662657 ~ 23684696 (+)
tmem265 LOC103373868,LOC104958454 coding upstream 245031 23598097 ~ 23610494 (+)
npas4a npas4,LOC102790988 coding upstream 269953 23579577 ~ 23585572 (+)
efemp2a efemp2 coding upstream 295682 23549121 ~ 23559843 (+)
pdzd11 pdzd11,LOC106604732 coding downstream 3868 23869142 ~ 23878676 (+)
inppl1b LOC104923483,LOC103373706 coding downstream 26142 23891416 ~ 23926666 (+)
p2ry4 p2ry4,LOC104957995,LOC106515297 coding downstream 66372 23931646 ~ 23938563 (+)
sox3 sox3,LOC104923485 coding downstream 88470 23953744 ~ 23956783 (+)
atp11c atp11c coding downstream 141133 24006407 ~ 24056276 (+)
G107565 dlg3,LOC102786504 non-coding upstream 55298 23798657 ~ 23800227 (+)
G107531 NA non-coding upstream 167453 23686594 ~ 23688072 (+)
G107507 slc25a5,LOC106926499,LOC103140121,LOC101464643,LOC102200398,LOC104931197 non-coding upstream 211010 23643292 ~ 23644515 (+)
G107410 ccdc85b,LOC102791751 non-coding upstream 316143 23535861 ~ 23539382 (+)
G107377 NA non-coding upstream 437982 23417224 ~ 23417543 (+)
G107570 NA non-coding downstream 19319 23884593 ~ 23985057 (+)
LOC120567136 NA non-coding downstream 81317 23946591 ~ 23976908 (+)
G107596 NA non-coding downstream 191267 24056541 ~ 24059249 (+)
G107704 NA non-coding downstream 547636 24412910 ~ 24413556 (+)
G107708 NA non-coding downstream 552317 24417591 ~ 24418293 (+)
G107487 mrpl11,LOC102790704 other upstream 229236 23590328 ~ 23626289 (+)
G107386 cfl1 other upstream 360536 23492844 ~ 23494989 (+)
LOC120566905 LOC104953971 other upstream 362987 23488285 ~ 23492538 (+)
ubl3b ubl3,LOC100692344,LOC101472018,LOC104925552,LOC103390851,LOC104960676 other upstream 389320 23454540 ~ 23466205 (+)
G107333 NA other upstream 585309 23268791 ~ 23270216 (+)
arhgef6 NA other downstream 522210 24387484 ~ 24453913 (+)
G107789 tmem35a other downstream 939926 24805200 ~ 24808701 (+)
nox1 nox1 other downstream 974912 24840186 ~ 24846893 (+)
apln NA other downstream 1207939 25073213 ~ 25097023 (+)
rpl39 NA other downstream 1414294 25279568 ~ 25282207 (+)

Expression


Co-expression Network