rpl39


Basic Information

Item Value
gene id rpl39
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25279568 ~ 25282207 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU145084
TGGACGGACGCTTATTGGATAAAAGGGCCGACGtcacttccttctttctcttcgGCCACCGCCATAGTCGGGAAAGGACTGGGGACAAAATGTCGTCCCACAAGACTTTCAGGATCAAGCGCTTCCTCGCAAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAatgaagactggaaacaagATCAGGTACAACTCCaagaggagacactggaggaggACCAAGCTCGGCCTGTAAACATGAGGGTCCCTGGATCCAAGCATCCCAACATCTGCCAGGACCTCCAGCTGCTGGGCCTGACTGCAGGGAGGGAGCCATGTTATCTGGACCAGCAGTCATTTTGTACAGATACTCTGGTTATGTTCATGTTTGACAATAAAAGATCTTTCATCAAACTTGATATGAGGCTg
>XM_039813253.1
GTGTGTAGAACTCATAGGTAGAAGGTAGAACTTGGAGCCAGTTGGACGGACGCTTATTGGATAAAAGGGCCGACGtcacttccttctttctcttcgGCCACCGCCATAGTCGGGAAAGGACTGGGGACAAAATGTCGTCCCACAAGACTTTCAGGATCAAGCGCTTCCTCGCAAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAatgaagactggaaacaagATCAGGTACAACTCCaagaggagacactggaggaggACCAAGCTCGGCCTGTAAACATGAGGGTCCCTGGATCCAAGCATCCCAACATCTGCCAGGACCTCCAGCTGCTGGGCCTGACTGCAGGGAGGGAGCCATGTTATCTGGACCAGCAGTCATTTTGTACAGATACTCTGGTTATGTTCATGTTTGACAATAAAAGATCTTTCATCAAACTTGA

Function

NR:

description
PREDICTED: ankyrin repeat domain-containing protein SOWAHC-like

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02924 RP-L39e, RPL39; large subunit ribosomal protein L39e

RNA

RNA id representative length rna type GC content exon number start site end site
TU145084 False 418 lncRNA 0.50 3 25279610 25282207
XM_039813253.1 True 450 mRNA 0.50 3 25279568 25282197

Neighbor

gene id symbol gene type direction distance location
upf3b upf3b coding upstream 10338 25265515 ~ 25269230 (+)
LOC120566922 nkap coding upstream 16882 25258629 ~ 25262686 (+)
tmem255a tmem255a coding upstream 27925 25241567 ~ 25251643 (+)
lamp2 NA coding upstream 48065 25215120 ~ 25231503 (+)
cul4b cul4b coding upstream 65021 25202150 ~ 25214547 (+)
nkrf nkrf coding downstream 28832 25311039 ~ 25315431 (+)
trnae-uuc_61 NA coding downstream 39018 25321225 ~ 25321296 (+)
elf1 LOC104965894,LOC103353227,LOC102314295,LOC100712278 coding downstream 39320 25321527 ~ 25363249 (+)
pcdh19 pcdh19 coding downstream 312106 25594313 ~ 25648201 (+)
glra4a LOC106949970,LOC101466695,LOC106920031,LOC106514543,LOC108231179,LOC103151720,LOC100711741,LOC103353264,LOC107377714 coding downstream 1075595 26357802 ~ 26418964 (+)
G107972 NA non-coding upstream 5937 25271539 ~ 25273631 (+)
G107958 NA non-coding upstream 27100 25252125 ~ 25252468 (+)
LOC120566737 NA non-coding upstream 171946 25106440 ~ 25107622 (+)
G107821 NA non-coding upstream 332232 24947121 ~ 24947336 (+)
G107820 NA non-coding upstream 332626 24946738 ~ 24946942 (+)
G107981 NA non-coding downstream 5912 25288119 ~ 25290199 (+)
G107985 tnmd non-coding downstream 98506 25380713 ~ 25394758 (+)
G107988 NA non-coding downstream 104261 25386468 ~ 25387635 (+)
G108020 NA non-coding downstream 216409 25498616 ~ 25498866 (+)
G108030 NA non-coding downstream 366327 25648534 ~ 25648802 (+)
apln NA other upstream 182545 25073213 ~ 25097023 (+)
nox1 nox1 other upstream 432675 24840186 ~ 24846893 (+)
G107789 tmem35a other upstream 470867 24805200 ~ 24808701 (+)
arhgef6 NA other upstream 825655 24387484 ~ 24453913 (+)
LOC120566416 NA other upstream 1414294 23855525 ~ 23865274 (+)
sept6 sept6,LOC106945475 other downstream 9400 25291607 ~ 25310218 (+)
btk btk other downstream 1179081 26461288 ~ 26476570 (+)
timm8a timm8a other downstream 1194589 26476796 ~ 26479297 (+)
grxcr1a grxcr1,si:dkey-109l4.6,LOC102787492,LOC106600617,LOC107601454 other downstream 2105439 27387646 ~ 27393621 (+)
LOC120566985 NA other downstream 2694120 27976327 ~ 28046891 (+)

Expression


Co-expression Network