clcf1 (clcf1)


Basic Information

Item Value
gene id clcf1
gene name clcf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21367088 ~ 21381178 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812662.1
gaggggaggaagaggagaaaggggTAGAAAAAGAGCAGGAGGAGAGTTGTGTGAGGGAGAGCGAGCTAATCtacaagaggagagaagacattcTTATCGGTTTATTTCAGCTCTAAAATTCACCGGTGGATGAACTTGTGAGAGCGAACTGAACGGAATAAAAGGAtttggagaaaatgaaaaggtTTTGCGGAGTCAATCAACATCAGCTCGTCTTGCTATTGGCTGCTGCCATGGCAACAGCCCTGGATCCTTCACACAACCTGGCAAGTGAGAGGAGTTCGATAGAAAGCACGTACGAGCTGACCAAATACCTGGAGTATCAGCTCAAGGAAATCAAAGACATATATCTGACCTACCTAGGCCCCCCATTCAATGAGAAAGACTTCTCCCCTCCTCGACCCAACAGTACCGCTCTGTCCCTGCCCAGCGCCGCCACCCGCCTGGAGCTGTGGCACGGCCTGGAGAACCAAGCTCGGCTCGCCCAGAACCAGAAGGCCTACTCTGTCCTGCTGGCGGCCGTCAGGGAGTTGGCCCGCTCCACCCTCTGCCCCGCCCTCAAGACATCCCTACTGCACTTTTGCACAGGCCTGGATGGGCTGCTGGGCTCCATATCCGCACTGATGACCACCCTTGGTTACGCACTTCCTCCACCATCTGCAAACATGGAAAGTAATGCTGGAGAGCTGCAGTACCCTCAGAGGGGGGCAGGGGGCGACCGACCTGCTCCACTGATGAGCCAGAGCCTTTACAGGTCCAGAGCCGGGACGAGGACAGAGTCCGGTCAGCGTAACAACCAAAGAAGAAGCAGGACAAGGGTGgtcagaggagagagggaggacggCGTCACCGTAGGCCTGGTGGAAAAAAGGAGAGGGAAAGAAGTTAGGAGAGTGGAGGCGACCGCAGCTGGAGAAAGGAGTGGCGGATCAACGGAGaagggaagaagagaaagaggaaggcgAGGGAGGAGGGAAGAGCCGGAGATTGGAAAATGGACTGCCAGTGAAGAAGAGAGAGTAgcggaggaagaagaggaggagctgGAGCGAGAGGGAGGGGCGGAGAGATGGGGAAGGAGAAGGTTATTGAGTATCAACGAGGATGttgaggagaaggagaggcagCCTGAACCCAGGGTAGAAGTGTCATACCCGGGCACAAGAGGCTCCAGCTCCCTTCAGCAACCGACCATccaaaccaacaacaacaacaacaatcagtACAGCTACAACATGAACTCACATCACATAAACACACTCAGAAAAGAAGATGGATTTATTGTAGAGGGAAGCAGAGGGTTAATGTTGGAGAAGGAGAAGCAAACAGAAATGGAAGctacctcctcttcctccactttCCATCTTCAGCATCGGCCTCGTCgctccctcctctcccctacCCTCCAAGCTCCTCTGTCAACCCTCTCCCTGCTCTACCAGTTCGGAGCGGGTGAGGAGCACACCCTCCTCTCCCAGCCCGTCCCTCTGTCTTTACAAAGGGGCACCTCCCTCCTTTCACCTCCCCTGACTCCGCTCctttcctccacctcctctgccTCTTCTTCGCATTTGTCAGTGCGGCCGACGATGAACGACTTTGCCAAAAAGGTGGAGGGGTTTTGGATATTGAGAGAGCTGCAGAGTTGGCTGTGGCGGTCGGCGAAGGACTTTAACCGCCTCAAGAAGAGACTCAGAGGCTGAGACATTGAGACACACAAGTGCAGTATATTAGAAATCGAGTATTTGCACACAATTGGAAGTGGAAACAAATTAAGAGCTTGAACAGACAAAAGCACAAAACCACATTCATGCTTAACACATTCATTCATACCGTACTGGAATAACTGAATGAAGGACGATTTGGCAGGTCACCAGAAGCGCTAATGgaatataacacacacaaagccaACACATTACCAGCACTGTCACCCGCCTGATGCACACAGCAGCTCATTGAGCGAGATACACTGAGACTGGGCTGAGTTACCGGACTTCACGACTCATAGTTCAACAGAAATACCACTGTAGGTGgttagacacacatacacacacacacacacacacacacacacacacacactccagatGTGTGAATCAGCAATCTCTTTCAAGGAAGAAAAGTTCTGAATGTGTAAAAGACAAAGGGAGAGGAGGAAATAGccagagggatgaagaggagaggaagacgGGAGGAGGCGTGAGTCAATGGATGAGCAGTGGCAATAACGGGCAGAGGGTTATTGCTGAGTAATCAGAAGTCGCCCGGTCAGTTACAGTAACTCTACAACAGTGCTTCACatactgtagacacacacacatgcacgcacgcacgcacacacacacgcatgcacgcacacgttATTTTGTGCCTTATCAAACAATTAATTTCTATGCTACTTTTGATTCAGTGCTCACCCATTTCACCTTTTTAATGATTTCACTACATAGCAACAAATATTTAACACAATCTTAAAATGTTGTATAACTGAATGAATTCCCCTAAAAAACCCacagttttgtgtgtctgtacaaacaaatagtttgacattttcggAAATACACTTACTTGCTTTTGTGCTGAGAGTAAGATGAGAACATCAATACCGCTCTCACTTTTGTGCACTTGATATGCAGCTGGAGCCAGCTGCTGGTTAGCtttgcttagcttagcataaagactggacatGGGGGGAAATAGCTCTGTGCAAAGGTATTCAAATCCAAATACCAGCACCTCTTAAGCTCATTAATTAACATGtaatatcttgtttgtttaatccagaCAAAAACAAAGGTATAAAACAACAACTTGCCATTGTGGAAACTTGTGGTCATGGAGAAGTTGCTTGGCAACGAGCGGAAACTGCAGGAACTCAGTGTTCTGAGCTACGAAACATAAAACCATAAAActtttaatgtgtgttaatTTTAAACTTGTGGTGGGCAGATGGATGTGGCATGTTACTCCCTCTATCACCACAAATTGTCATTTTCtagttttctgtttgtgtatagggattatatttaacatttaacagttATGTTTAACAGATATAAGGTACTCGGtaatcaatcttctcatctaactctcagaaataatgcaaaaatgccaaactatTACTTTAAACACAAACCATTAGACACATTGATGTGAATTGTTTGTGCCTTTTAAATCATGAAATCCgattcttttttctttggcaACTCACAGAtggcttaatttcttttccAGAATAAATCTTGTGTTATGTCTTTACAATGTGCCTTGGATGATATGGCTAAAGGTTATGGATCATATCTCTAATATTTATTGAACAAgatgtttatttattgttaaatcCAGTGTGAATATACTGTATTGTAACTCAAAATAGTATAAATACTAGCTTTTGTACAGAG

Function

symbol description
clcf1 Predicted to enable cytokine activity. Acts upstream of or within positive regulation of axon regeneration. Predicted to be active in extracellular region. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 2. Orthologous to human CLCF1 (cardiotrophin like cytokine factor 1).

NR:

description
uncharacterized protein LOC110487734

GO: NA

KEGG:

id description
K05421 CLCF1, BSF3, CLC; cardiotrophin-like cytokine factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812662.1 True 3401 mRNA 0.47 4 21367088 21381178

Neighbor

gene id symbol gene type direction distance location
slc43a1a slc43a1 coding downstream 18154 21314294 ~ 21348934 (-)
tmx2a tmx2 coding downstream 58953 21302070 ~ 21308135 (-)
smtnl1 smtnl1,LOC106942261 coding downstream 128565 21233306 ~ 21238523 (-)
LOC120567254 NA coding downstream 136713 21220217 ~ 21230375 (-)
LOC120566637 ctnnd1 coding downstream 147657 21196765 ~ 21219431 (-)
zgc:113229 NA coding upstream 35516 21416694 ~ 21423613 (-)
tbc1d10c tbc1d10c,LOC106938142 coding upstream 48316 21429494 ~ 21438163 (-)
LOC120566376 NA coding upstream 113716 21494894 ~ 21500640 (-)
LOC120566537 LOC104958700,LOC103358614 coding upstream 125891 21507069 ~ 21510003 (-)
LOC120566697 NA coding upstream 238685 21619863 ~ 21621608 (-)
G106802 med19 non-coding downstream 52961 21312363 ~ 21314127 (-)
G106793 clp1,LOC102795812 non-coding downstream 79307 21286314 ~ 21287781 (-)
G106784 NA non-coding downstream 110441 21252905 ~ 21256647 (-)
LOC120566633 NA non-coding downstream 203025 21149902 ~ 21164063 (-)
LOC120566356 NA non-coding downstream 293175 21070141 ~ 21073913 (-)
G106825 ssrp1 non-coding upstream 8434 21389612 ~ 21401183 (-)
G106848 NA non-coding upstream 59646 21440824 ~ 21443089 (-)
G106852 ran,LOC105022884 non-coding upstream 62219 21443397 ~ 21446726 (-)
G106872 NA non-coding upstream 108878 21490056 ~ 21490821 (-)
G106959 eef1g non-coding upstream 319771 21700949 ~ 21725692 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 179435 21178852 ~ 21187653 (-)
G106728 mif other downstream 236118 21127838 ~ 21130970 (-)
LOC120566885 ppp2r2c other downstream 257021 21075757 ~ 21110067 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 1133164 20230908 ~ 20233924 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 1385455 19971833 ~ 19981633 (-)
G106988 NA other upstream 409075 21790253 ~ 21790725 (-)
G107015 NA other upstream 738507 22119685 ~ 22120067 (-)
G107117 NA other upstream 1309982 22691160 ~ 22692831 (-)
G107235 rom1,LOC103366586,LOC102779683 other upstream 1609809 22990987 ~ 22993229 (-)
trpt1 trpt1,LOC102777684 other upstream 1711387 23092565 ~ 23177026 (-)

Expression


Co-expression Network