zic3 (zic3)


Basic Information

Item Value
gene id zic3
gene name zic3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 24333709 ~ 24338932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812939.1
GTGAGTGATTGACTTTATCAGTCCAAGGACATCATCCGCCTGGAAAGGGGGGGAAGTTTGATCCTCTTTCTCACGGATCGCAGTCAACGGGAGTTTTTTTCTCCCAACTCTTTACGCATAGGATTTTCCCCTGTTTTggctctgttttttattttttttattttaggattTGTCGCAAAACGTTGTAAATCTCGGCGCGGTGTCTGCAGCTTGCGCGCTCCGCTACACtggattttaattttattttctgttttcttccCGTCTCCTAAGTTTGCTTCAAGCTCATGACTATGCTTCTTGATAGCGGTCCGCAGTTTGCATCGTTAGGAGTGGGGGGTTTCGGGACACCACGGCACCACGATATCGGGAACAGAGACCCGGGTCTGGGACTGAATCCCTTCACCGATTCCTCCCACTCCGCAGCTTTCAAAATCAGCCCCGTGTCTCACGATATCGCCTCCAGCCAGACATCAGCGTTCACCCCGCAAGCCACTGGATATGCAGCTGCCCTGGGACACACTCACGGCGGGCAGGTGGGCTCGTACGGTGGAGGAGCGTTCAATTCAACACGGGACTTTCTCTTCCGTAACCGGGGTGTTGGTGAGTCCGCAGCGCCTGGCGCCCAGCATGGGATCTTTGCAGCTTCGGCGGGGAGCCTCCACGGGCCGCCCGGGATCGGCGATAACCCCGGACATCTGTTGTTTCCAGGACTCCACGACCAGGGGGTGAGCCACTCTTCACCGAGTGGACATGTAGTTAACAGCCAAATGCATCTTGGCTTACGCGGGGACATTTTCGGAAGACCTGATCCCTACCGTCCGGTCGCGAGCCCTCGGACGGACCCCTACGGGGCTCAGCTACACAACTACGGCCACCCTATCAACATGAACATGGGGATGAATGTGCCGACACACCACGGTCCAGGAGCCTTCTTTAGGTACATGAGGCAACCGATTAAACAAGAATTATCCTGCAAATGGATAGACGAGAACCAGATGAACAGACCCAAAAAGACTTGTGACAGGACTTTCAGCACCATGCACGAGATGGTCACTCATGTGTCCATGGAGCACGTCGGCGGCCCCGAGCAGAGCAACCACATCTGCTTTTGGGAGGACTGCCCGAGAGAAGGGAAATCTTTTAAGGCCAAGTACAAACTCGTCAACCACATCCGTGTGCACACGGGCGAAAAACCGTTCCCATGCCCGTTCCCCGGATGTGGGAAAATATTCGCCAGATCGGAAAATTTGAAAATCCACAAAAGAACACATACAGGTGAGAAGCCGTTTAAGTGTGAATTTGATGGCTGTGACAGACGCTTCGCCAACAGCAGCGACAGGAAAAAGcacatgcatgtgcacacaTCAGACAAGCCATACATCTGCAAAGTGTGCGACAAGTCATACACACACCCCAGCTCTCTCAGGAAACACATGAAGgtACATGAGTCTCAAGGATCTGAATCGTCTCCAGCAGCAAGCTCTGGATACGAGTCGTCCACACCGCCAGTGCTGGTCTCAAACAGCACTGAAGACCCGACAAAAACACCGCCGTTAGCCGTACAAAACACGTCCGGCCACAGCGAAGGACTGGCACCCAACTTTAATGAATGGTACGTTTGAAGTCAGAGGAACAAACCTCACAACGTGGACCAAGGAGTTAAGGATAAAAACCTTAAAAACTATTCCTGTTctcttcacacacatacacacacacacacacacacagagagagagagagagagacacacagacacacacacacacacacacgctgtcaGACACACACGGATGGGATTGGGACAACAACTACAACAGGAGATGAGAGCAAAAGCCAGCACCAAGCAGGCCACATCCGTTCTCAGGATCACGAAATTTGACTTTTACTCCGCATTTTtgaggaaataaaaataaaatcacgaATAAATAAAGCGTAATACTTTctcagtataaaaaaaaatgttttttttttatcttttagtttacagaaaaaaaaatttatttttcattttatgtattttctcaaatttttatttaaaaaaaaagaataaaaaggcaGATTATTTCACGCTGTTTTTATATGACGGTGATGCGCTATTGTCGCCTCTTCAATTGATTGTTGGAACTTCAAACAGTCTTAAGAAACGTGCCAAAGTCTTTGTCATGAACttgaacacagaaaaaaaaaaactaaataaatattatactCGTGAATGTATTTCCTTGTTTGATGGGGTCGAATCTATTGTCAACGTCCGTTTTCAGGTGGAGAAATGTGGTATTAGGTTACGATTGTTACCGTTGAATATAACGTTGCCTTTTGTTAATACCGTTGTAAATACATATCCATGATGCCATATTTATCAATTTGTAATTTAATTATGGGTATAAGTTCTGAAACTTAAATGATATTTATGGAAATGTTTTCTAACAAGAGCTGTACAGTTTTGGTCATAACCAGCTTAACATTGAACAAATGATAAACTCTAAAGCTCCAACATCTCGATTGTAtccttctgtttgtttttttaaccaatagGCCTATATGTGTCTTATTTGGATCGAAGAAATCATCTATATGAATATTATGGACTTGTCTATATATAATGCAGATATTTCCgtcacttttattttctttatgagACCATTGACATGTAAATCATTGACTTTGTAGGACTGAGTTCAGTTGAGCTGAGAAGCTATAAAACGGTTCTGTTGATATCTTTATTTTTGGTtcaatttaaactttttttgtgttttacttttatAGAATCAGAAATAGATGTCAATTCGTAGCATAAACTCAGTATTGgacggggggaaaaaaagaaaaaaatcagcctattgcACTCCTATACAGGTCTTAGACGAGTGTGCGAAGTTCATGATTTCCAAATCAAGGTGACAGCATTTTGAGTATTTCAAATTCGGGTCAAGCACCCAAATATATACGCCTGTGTGGCAATCTTTATAGTTCCAGCTATGTCTTTGTGCAAGTATGTTTAAATGTGTGCATCGGCAACAATGGAACTGTCACAATACAGTAtcttcaaaaataaaagaagtttttttgtctgtcagcttgcattgttttaaatgtaattctTCTGTGAAACTAAGCGTGTTATTTGTTGTGGTGTTGCATATAGAGCAGTTTGTGAATAACTTGTCaagatgacatttttttgtgtttaacaAAATTTAGTGGAAGGAATCTAGATCTATGTGGGTTGGGGGGAGAATAGTTCAGTggcaaaaatagtttacagcaTTGCATTGTAACCTATTCTCAAGAATTAAATATGCATAGACAAAGTATGTTGTACTCCTATGAGAACAATTTCAGACCACCAGCactacttttaaaataaaatgtaaaaaaaaaaacggtaccTCGTGACAGTGATATATGAaataagtttatttaaataatttaaggaatatatgttttatatgctATTTTCTATACCTTAATTTAAATGAAGTACTTTTTCTTATTCCCACCACCTTTCTGCCCCATGTCCAGAGGTCAGCGAAAAATATCTGATGTATAAACACAGCTAGAATGTGATGTTGTAACACTTTCTGGGAGAAATGGGTCACACTCCAAGTTATTCCTGAAGAGCAAAAATGTTTTACTGATGAACTGTGTCACTGTGCCACATTGAGGCAAACCATGTTACAACAGCAGGCCTATGCGTTAGCCTATTTAGCTACCAGAGGCAAAGGGTCCTTGTACTTTTTAGGCTACTGTATGTTGGTTGATTTGTTTTACCAACTATTTATGAAGAAATGTGAACGGAAATTTTgactgaaattaaaaaaaaacattgtgaaaaGCGA

Function

symbol description
zic3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within anterior/posterior axis specification and determination of left/right symmetry. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesoderm; neural keel; neural plate; and presumptive structure. Used to study right atrial isomerism; spina bifida; and visceral heterotaxy. Human ortholog(s) of this gene implicated in X-linked VACTERL association; situs inversus; and visceral heterotaxy. Orthologous to human ZIC3 (Zic family member 3).

NR:

description
PREDICTED: zinc finger protein ZIC 3

GO:

id name namespace
GO:0009948 anterior/posterior axis specification biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18487 ZIC3; zinc finger protein ZIC 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812939.1 True 3842 mRNA 0.42 3 24333709 24338932

Neighbor

gene id symbol gene type direction distance location
fgf13a fgf13,fgf13a coding upstream 132216 24102189 ~ 24201493 (+)
mcf2a mcf2,LOC106941039 coding upstream 250015 24060121 ~ 24083694 (+)
atp11c atp11c coding upstream 277433 24006407 ~ 24056276 (+)
sox3 sox3,LOC104923485 coding upstream 376926 23953744 ~ 23956783 (+)
p2ry4 p2ry4,LOC104957995,LOC106515297 coding upstream 395146 23931646 ~ 23938563 (+)
gpr101 gpr101 coding downstream 65256 24404188 ~ 24408026 (+)
rbmx rbmx,LOC102781209 coding downstream 81929 24420861 ~ 24426199 (+)
map7d3 map7d3 coding downstream 156737 24495669 ~ 24527611 (+)
taf7 taf7l,taf7 coding downstream 220324 24559256 ~ 24568647 (+)
LOC120566612 LOC100702800,LOC102305317,LOC101472616,LOC103353306,LOC105925836,LOC107089258 coding downstream 230116 24569048 ~ 24583867 (+)
G107596 NA non-coding upstream 274460 24056541 ~ 24059249 (+)
G107570 NA non-coding upstream 348652 23884593 ~ 23985057 (+)
LOC120567136 NA non-coding upstream 356801 23946591 ~ 23976908 (+)
G107565 dlg3,LOC102786504 non-coding upstream 533482 23798657 ~ 23800227 (+)
G107531 NA non-coding upstream 645637 23686594 ~ 23688072 (+)
G107704 NA non-coding downstream 73978 24412910 ~ 24413556 (+)
G107708 NA non-coding downstream 78659 24417591 ~ 24418293 (+)
G107709 NA non-coding downstream 88342 24427274 ~ 24427808 (+)
G107770 slc9a6 non-coding downstream 217689 24556621 ~ 24558239 (+)
G107790 arl13a,LOC105925700,LOC102776915 non-coding downstream 474716 24813648 ~ 24818151 (+)
LOC120566416 NA other upstream 468435 23855525 ~ 23865274 (+)
G107487 mrpl11,LOC102790704 other upstream 707420 23590328 ~ 23626289 (+)
G107386 cfl1 other upstream 838720 23492844 ~ 23494989 (+)
LOC120566905 LOC104953971 other upstream 841171 23488285 ~ 23492538 (+)
ubl3b ubl3,LOC100692344,LOC101472018,LOC104925552,LOC103390851,LOC104960676 other upstream 867504 23454540 ~ 23466205 (+)
arhgef6 NA other downstream 48552 24387484 ~ 24453913 (+)
G107789 tmem35a other downstream 466268 24805200 ~ 24808701 (+)
nox1 nox1 other downstream 501254 24840186 ~ 24846893 (+)
apln NA other downstream 734281 25073213 ~ 25097023 (+)
rpl39 NA other downstream 940636 25279568 ~ 25282207 (+)

Expression


Co-expression Network