LOC120566697


Basic Information

Item Value
gene id LOC120566697
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 21619863 ~ 21621608 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813286.1
GTTCACTTTCACATTCAGACGAGAGATTTTTTTTAGCTCTGAAGACATTTAGCCAGCAATTCATCAGATCAACTGCTCACTGCTCACACTGCAGACATGAAGTTTGTGATCCTGTTTGTTCTTTTGAGTGGGGCTTTTGCTGCCCCATTCATGAAGGAAGAGCAGGCAAAGCGATTCATCAGGCTGAAGAGACAGTCGGGATACTGGGATCCGCACCACTCTCAGAACCAGTGGGGTTACACCATTCAGGAACAGGCAAACGAGTACTGGACAGCACTACGAACAGATGCACAGTACTACATGGACATGAGTAACATGATGTTTGACCGCTCTGTGGCTACGGAAAACAACAGGCTGTATATGGAGATGCTGCGCCAAGCACGAGCTCACCTGGACAGTCAGACGGATCAACacagataaataataaaaagaggaaaattAAGGAGAGAAGCAATCCTGTTGTAGTCAAACATATTACAGTGCTTCCTGGTGGTTAAAGCTAAAACATTTACCCTAATGTAATTTAGGAATACATTCAacatattacatacattacattggATCTGTATAAAGTGGacatcagagtttaaaatgGTTATGGTTAAAAGGGTGCATAAGATGATTTTTGTTGGCAACAAATAATAAcatgttaaagggatacgccaccgtttgttgaaata

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813286.1 True 680 mRNA 0.41 5 21619863 21621608

Neighbor

gene id symbol gene type direction distance location
LOC120566537 LOC104958700,LOC103358614 coding downstream 109860 21507069 ~ 21510003 (-)
LOC120566376 NA coding downstream 119223 21494894 ~ 21500640 (-)
tbc1d10c tbc1d10c,LOC106938142 coding downstream 181700 21429494 ~ 21438163 (-)
zgc:113229 NA coding downstream 196250 21416694 ~ 21423613 (-)
clcf1 clcf1 coding downstream 238685 21367088 ~ 21381178 (-)
si:ch211-175m2.5 LOC104942593,LOC103358585,LOC101471829 coding upstream 71079 21692687 ~ 21697083 (-)
pcdh11 LOC104946172,LOC103356418,LOC101473199 coding upstream 263164 21884772 ~ 22015753 (-)
tsc22d3 LOC103390732,LOC104954424,LOC101161414,LOC103356417,LOC102306956,LOC102786303 coding upstream 753658 22375266 ~ 22408211 (-)
slc16a2 slc16a2 coding upstream 1097286 22718894 ~ 22743071 (-)
LOC120567161 NA coding upstream 1156797 22778405 ~ 22783217 (-)
G106872 NA non-coding downstream 129042 21490056 ~ 21490821 (-)
G106852 ran,LOC105022884 non-coding downstream 173137 21443397 ~ 21446726 (-)
G106848 NA non-coding downstream 176774 21440824 ~ 21443089 (-)
G106813 NA non-coding downstream 211574 21360316 ~ 21408289 (-)
G106959 eef1g non-coding upstream 79341 21700949 ~ 21725692 (-)
G106989 klhl4,LOC104919997 non-coding upstream 170197 21791805 ~ 21792629 (-)
G106990 NA non-coding upstream 174203 21795811 ~ 21796361 (-)
G106991 NA non-coding upstream 176615 21798223 ~ 21800003 (-)
LOC120567355 NA non-coding upstream 232800 21854408 ~ 21857861 (-)
LOC120566634 LOC104961169,LOC103354768,LOC101069382 other downstream 432210 21178852 ~ 21187653 (-)
G106728 mif other downstream 488893 21127838 ~ 21130970 (-)
LOC120566885 ppp2r2c other downstream 509796 21075757 ~ 21110067 (-)
G106443 LOC103366336,LOC104937910,LOC104959671 other downstream 1385939 20230908 ~ 20233924 (-)
fgf18a fgf18,LOC103359300,LOC103390897,LOC106511287,LOC105939829,LOC104951878 other downstream 1638230 19971833 ~ 19981633 (-)
G106988 NA other upstream 168645 21790253 ~ 21790725 (-)
G107015 NA other upstream 498077 22119685 ~ 22120067 (-)
G107117 NA other upstream 1069552 22691160 ~ 22692831 (-)
G107235 rom1,LOC103366586,LOC102779683 other upstream 1369379 22990987 ~ 22993229 (-)
trpt1 trpt1,LOC102777684 other upstream 1470957 23092565 ~ 23177026 (-)

Expression


Co-expression Network