aff2 (aff2,LOC102788099)


Basic Information

Item Value
gene id aff2
gene name aff2,LOC102788099
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 4139145 ~ 4320571 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813457.1
AAGAGGATGGGGAATTCATCTTCCTCATCGTCAACTTCCATGCAACCTCCCGCTTCGAGTGCGTCGTCAGCAAGCGCCACAACGATCCCGCATCAGAATTCGAAAAAGTCCCGGACCTCCATGGACTGGTCAAAGGCAGGCCATGGACAGAGCGCCCAAGGAACAGGCCTCGTTCTGGGGTTAGCACAGAACGGGCAGGGGCAGGTCACGGCAGCTGCGAGTGGAAGAGggaaaatgtctttattagagGAACAGCAAATGCAACGTCATGAAGAGCTGTTTAGCTCCCTTAAAGATGAACTTGGTCTAAAAGGGGACTCGAgcccttcttcctcttcttcgtcctcctcttcctcatcttctTCTGGGAGAAGGCACTCTTCACATCCGTCCAAAGCCCTTCCGCTCCCAGATGGTGGCAATTTTCGATCTTCCACCATGGACGGTGGCCATTTTAAGTCTTCCACTAACACAGAAAATGGGGGACATTTTAAATCCTCCCCGTTGGAAAATGAGACCGGTTGTCACCTCTCTACATCCTCCTCTCCGCTGGCTTCCACATCAGTTCTGACAACGCCCACTCCTGGTCTAACCACTCCCACATCCGGACTGACCACGCCCACCTTCCCACCTGGTAGCCTATCGGGGAAGCCCATCGCAGTCCAGCAGAAGCCCACAGCGTATGTCCGACCAATGGATGGCCAGGACCAGGCGCCCAGTGACTCGCCCCAGCTTAAACCCCCCTTAGTGGCCACAGAGGGATTTAACAACAGTCAGTCTTACGGAGGAAACTCTGGGAATGCGAAGAATAAACTGCCAAAACTGAGTCTCAGCCACGCAGGGGAGGTCAGCCTACCAAATGACTCCAGCTGTGTTGAAGAGATCTTGCGGGAGATGACCCATTCCTGGCCGCCTCCTCTCACAGCCATACACACTCCCGGGAAGGCTGATCAGACCAAGTTCCCCATCCCGTCTAAGgagTCACAGCATGTGACCTCAGGCTACAACACCCAGAAGCGATGTACTGTATCAGCTAACAAGCCTGCTGCGAAACCACCAACTGCACCACAGAAGTCAATGTTGGAGGATGATCTGAAGATCAGCAGCGATGAGGAAGAGGCCGAACAGCAGGTGTCTGACAAGCCCAAAGCCAGAGGCACAGCCCTAAGTGGAGCATCGGGGAGCAGCAGCGaatcagagagcagctcagAGTCGGACACAGACGAATCAGAGAGCAGCTCCAGCGACAGCGAGTACAATCGGGCCTCCCGCACACACACTCCAGAGCCTGAGCCCCCCTCTGCCAACAAGTGGCAGCTGGACAGCTGGTTGAACAAGGTCCAAGCTCAAACCAAACCCCTGGTTCCCCCACAGAAAGAACATGGCACAGGCTCCGTTACCCAGGGTCCGGGGACTTTCTCTCCAGGGAATGGAGCACCAGGAGTGGGTGCGGCCGCCAAGACCAAGCCCTGCGGATCCAGCAGCACCCCTGTTCCAGCTGCACCAACGGTGGAACACAAGGATACAAGGGGAGCCTTCTGCCCAGGCAGAGAGAAGGCCAAGGCCAAGCTCAGCCAGAAGGCCTCGGGGGAGGGCCAGAGGCCAAAGATGAGGATGTCACCGGGCCTGTTGTCAGGGCCAGAGGTCCCGACCCCGAGGAGGATCACCACGGGGAAAAAACAGCCCAGACGGACGGAGAGGTCCAACAGTGTGGAGGATAATCCGAGCCAGACATGGAGCAGAACGAATCAGCATAGCCCTGCAGCTAGGGAGAAGGACCTGttgcctccccccccctccgtGGAGCTTCAAAACCCCCTGAGGCCACGAAGCAAACCCCCCAGTGGGAAGACCGCCCCCAGGAAAGAACCTCGCAGTGCCACCAACTCAAACAGCAACACAGTGACTCCACCAGCGGCTCTACAGCAAACCCCCGTGCCAATACCTGCTGTCACTGTAAACCAGGACAAGAGGAAACACAGAGGTCCAAGCACCAAAATCACACCCAAGTCCCGGGAATTCATCGAAACCGATTCCTCGTCCTCTGAATGCCATTCGGATGCGGAGGAAGCCGTCAAAAACCCCACTCTGCCACCCCAGGCGACGCGCTCTGCGATGAACACACAGACTCTGTCCAACACGCACGTGCACGCGCCTCTTCTCCCGTGCCTCGGCTCTGCTGTCAGCGTGGGGAGCCTGGGGATATTCGGAGGGAAGGGACTTCGAGTCAAAGACGGTAGCAGTGTGACCACTAATGGTAGCAGCGGTAGTAACAGTAGCATCAGCGCTGGGACTAACGGCAGCAGTAGTAGCTGTAACTCGCTAAGCATTAGCAACATAAGTGGTTCGTTTGGCACTTCTGTTCCTGATCCTGGAGGGTTAGCAGGACAGTCCAAAGACCCGGAGTCCATGTCCCCGCCTTCCAACATCGGACACGAGGTGCCTCTGTCCCCCTTGAGGGAATACCAAGGGATCCAGAGTTTATGGGTGAAAATTGACCTGAGTTTGCTCGGCAGGGTGCCTGGCCAGGGTTCGGGGGAAAGGTCCATGGTGGGAATGGCAGAAAGGGACGGAAGTGAagggagggacagagacagagagcgacaaggggagagggagaggatagGGGTGGccgagagagaaagacagaagcaGGCTGAGAGAGAGTGGCCCGGGCTGAGAGAGAGGCAGAAGTTACCTAAGGGggagaaacaggaagaggaaaatGAGCGATTAGTgcaggacagagagaggcaaggtgacagagacagattagcagagagagagaggcagatggacagagaggacagagaaagattGGGGCttggggagagggagagggagaggacgaCGGGGAAGGACAGAGAGAAGGTATGCCAAGGTGTGGGGGTCCTGGACAACCCCCCTGTACAAGAGCAGAGTAATCCCAGGCTGGcagggaggatggagagaggagagaacgGAGGCAAACACAGGAGGCAGGCAGCTGGAAACATGGTGGTCccaacagagaaacacaccaGCAAGAGCAAGAGGAAACACAAGTCGGACCACAGCGAGTCATCGGTCAACGGCAATAAGAAGCTGCGATTGGACAAAGACTGTCTGCTCCTCCCACCCTGCATCTCTCCAATACACAACCACAAGAACAGCTCCACAGAGGGCATTGTGGTTAGGGAGAAGGACTTCATCTCCCAATCTTCCCCCAAGAAGTGGCATGTCACCCCCAGTAGCTCCCTAAACAGGAAGCAGTCTCGACGGCGCGATGACAAGCTGCTCCCCCCGCTCCTGTCCCCCCTCTCTGACGATCCACCTCGTAAACGAACCTGTGACAGCAGTTCCTCTCTCAGCCAGCACGCCGCCACCGGGATGCTTCCTTGCTcggcctcttcctcttccacttcctcttcctcacacagacacaggagaGGGGAAGGCAAGGCGTCATCACGTGCAAGAAACGGCAGTGAAGTGGATACCCACGGCGAGAAGCCCTGCGGAGATGGTTACCATGCCAACGGACAGTCAGATTCAGAGGCGTGGTCGGAACCTGCCGAACCTCGCAGGCCAAGACTCTCATTTAGCGACACAGTCCACAGTGCAGACTACTACATGCAGGAGGCCAAGAGACTGAAGCACAAGGCTGACGCTTTGATGGACAAATTTGGGAAAGCGGTGAACTACGCCGACGGCGCCCTCTCCTTCATAGAGTGTGGAAATGCTATGGAGCGAGATCCGCTGGAGGCCAAATCACCGTATACCATGTACTCTGAGACTGTGGAGCTAATCAGGTATGCCATGAGGTTGAAGAACTTCACCAGCCATTCAGCCTCCATCGCTGAGAAGAAGCTCGCTGTGTTGTGTAAccgctgtctgtctctgctgtaTCTGAGGATGTTCCATTTGAAGAAAGACCACGCTGTCAAGTACTCGCGGTCGCTCATGGAATACTTCAAGAATTCAGCCAAGAGTTCCCACCAAGCACCCTCTCCCTGGAGGACCAATGGGAAGGTCAATGGGACTCCATCCCCCCTCTCACTCTGCCCCTCCCCAGCCAGCAGCggcggtggaggaggaggatctGGAGGCACCCTGGGCTCGTCAGGAAGTGTGGCTATTCCCCAACGGATTCACCACATGGCCGCCAGTCACGTTAACATCACCAACAACATCCTGCGGAGCTATGAACACTGGGAGACGGCTGACAGACTGGCCACTGACAGCAAAGAGTTCTTCCAGGAGCTGGACTCGGCAATGGAGCCGTTGAGTCAGCAGAGCAGCATGACAGAGCTGGTCCGACACATCAGGCAGGGACTGCACTGGCTCCGCTTAGAGGCTCACCTGCTGTAAGGACTGGACCAGagccaaaatataaaaaaaaaagaaaagaaaaagaaatgggcCTGGGAGGTAGAACTGGCTTAACAAGTGAGATAAGACTCCTGACGATGCTTCAGATCCCACTGGGATCCTTCAAATGACCCGACACCACCCATAATCATGTAACGGCATAGATTGGGTGGATTAATTGGCCTGAAATTCACCTGCAATTAGGACTGAACAGTAATTAAGTTTGGGAATTTTAACTGTGAATCACCGAATACAAATGAGCACATTAAAAAGTTGGCTGATGCTGCTTTTTGGAGCAACTGAATATCAGCGCAGGTAGCTTAAATTCCTAAAGCGACAATAGATGTTACAAGCCTCCCTGTGTCCCTGAATAGAAATAGGAAGCAGAGacgaaaggtaaaaaaaaacccCGACAAggtatattttcaaaaatatatgCTAGAGGCTGATCTGATTAAGGAGGCCGAAAGCAAGGAAGGAGCTCGACAGAGGCTCATCTGCTCCAGCAGTGGCCTAGAAACTTGTCTGTGATTGGGACTAGAATTAAAGCCTCCGGCTGATATTGATCCAAGTGGAGTACAGGTCCAATCAATTAGATAAGGGCCACGCCGGTAAAGGAAGGAGGCTCAGCTACCACTAGAGCTGAATCAATGGAGGCTGACGTTTCAGTCAGAAGCTAAAAGCTGCTGAACCTGAGCCTCTGTTTTGTATTCTATTAgtaatttaaaaacacatagTAATCAGCCACAGGGATACAAAATGGCTTCTGAAGAGTGACTTCTGAAAAGTCAGACAATGTGGTTAACAGGTCTgttcaatttttcatttttaaaattataATCCTTAAGACTTTCATCATATGAAACTCAATTTTTGATTTTAGTTATGGCTGCCATTCATTCTGCTATGGCCATTGAATGCACTCGTTAGTAACCGTCCATTAAGTAGTTTCAGTTGTCAGTGGCGGAGTCCGCCATTCCTGCACTGGATTTGAATGGCGTACACATGCGGTAGGGATTCACAGGAAATGCACAGGATAAAATTTAGAAGACCAAAGATGGTGCTTGCATAAAAAAGCAGAGCAGCTGGTCGTGGGCATTTTAAAGAGGAAATTttataaaagtaactgtgtgcacatcccaccttctggcaggtgcaggacaaatgaaagtacttaaaacaaaaaacaaatgtaacgTCCGcgacactgctttaa

Function

symbol description
aff2 Predicted to enable G-quadruplex RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Is expressed in intermediate cell mass of mesoderm. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 109. Orthologous to human AFF2 (AF4/FMR2 family member 2).

NR:

description
PREDICTED: AF4/FMR2 family member 2-like

GO: NA

KEGG:

id description
K15194 AFF2; AF4/FMR2 family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813457.1 True 5566 mRNA 0.53 25 4139145 4320571

Neighbor

gene id symbol gene type direction distance location
dcps dcps coding downstream 49181 4070416 ~ 4089964 (-)
zgc:66433 NA coding downstream 71842 3991193 ~ 4067303 (-)
fam199x fam199x coding downstream 192621 3937240 ~ 3946524 (-)
gpr137 LOC104944999,LOC103363481 coding downstream 237655 3893627 ~ 3901490 (-)
gabra4 gabra4,LOC102799072,LOC104964893 coding downstream 349094 3752237 ~ 3790051 (-)
rab33a rab33a,LOC101483604 coding upstream 143999 4464570 ~ 4486456 (-)
si:ch211-159i8.4 LOC104955358,LOC102291224 coding upstream 172676 4493247 ~ 4541941 (-)
si:zfos-2326c3.2 LOC103357640,LOC101482059 coding upstream 303003 4623574 ~ 4725058 (-)
LOC120566320 NA coding upstream 421379 4741950 ~ 4752833 (-)
il1rapl2 LOC102203371,LOC101467026,LOC100703458,LOC102781211,LOC103357641 coding upstream 443511 4764082 ~ 5389853 (-)
G103341 NA non-coding downstream 153675 3983860 ~ 3985470 (-)
G103337 NA non-coding downstream 158154 3980471 ~ 3980991 (-)
G103336 NA non-coding downstream 163024 3971865 ~ 3976121 (-)
G103277 NA non-coding downstream 212994 3925943 ~ 3926151 (-)
G103275 NA non-coding downstream 219676 3918925 ~ 3919469 (-)
G103429 NA non-coding upstream 209024 4529595 ~ 4529882 (-)
G103426 NA non-coding upstream 238217 4558788 ~ 4559372 (-)
G103436 NA non-coding upstream 295409 4615980 ~ 4616607 (-)
G103461 NA non-coding upstream 413599 4734170 ~ 4734419 (-)
G103495 NA non-coding upstream 441767 4762338 ~ 4762926 (-)
smim19 smim19 other downstream 205925 3928930 ~ 3933220 (-)
G103268 NA other downstream 213836 3902991 ~ 3925309 (-)
guf1 guf1,LOC102797887 other downstream 496505 3624159 ~ 3642640 (-)
pabir2 LOC104944540,LOC105929195,LOC106528854 other downstream 1240600 2890970 ~ 2898545 (-)
LOC120567378 NA other upstream 78 4320649 ~ 4400058 (-)
fmr1 fmr1,LOC102779310 other upstream 105946 4426517 ~ 4457827 (-)
myot LOC103355626,LOC104955473 other upstream 233654 4554225 ~ 4575676 (-)
G103434 LOC102212171 other upstream 255211 4575782 ~ 4586084 (-)
LOC120566343 NA other upstream 2436221 6756792 ~ 6759576 (-)

Expression


Co-expression Network