cebpd (cebpd)


Basic Information

Item Value
gene id cebpd
gene name cebpd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21797438 ~ 21798854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815194.1
AGCTGCCTCAGAGAAGTGTAAAGTGTTGTCAGTGACGGGGCGCTAACAATCAACACCCAGGGTTAATATCCAgagatttttttatgtatttatttttttaaaggagaaAGGTGCGTGCGCAGAGCGAGAGTAAGAGAGAGCTGTAGGGTTGTTGTGCTGTCACATCTGTgggttacattttaacacgTTTAAATCCTTCCTAAACCACGTGGGTTCATGTGTGACATATATAGCCTGGACTCTCACTGCGTGTCTCCACGATGCAACATGAGTTGGGCGATGGAGCCTGCTAACTTCTACGAGAGTACCAAGTTGGGCGTCCCGCAGCAGGGGATCTGCAAGCCGGGCAGCAGGAGCGACGGTGCTGGCGAGGACGGCTCCATGGTGGAGCTGAGCACCGCCCCTGCCATGTACGACGACGAGAGTGCCATCGACTTCAGTCAGTACATCGAGTCCATGACAGCCGTGCCAAACCTGGAGCTGTGCAACGACGAGCTCTTCCTCGACCTGTTCAACACTGTGAAGCAGGAGAAGGCGGATTTCTACAACATGCAGAGCCCCGTGCAGCCCTGCAGCATGCAGCAGCTGTCAGCCACATACGCAGAGAGAAAGGTTGAGAGCGGGCTGGAGAAAGGGGCGTTTGGGGCGTTTAGTGCGCCTATCAAGCAGGAGTCCGACTGGAGTGACAGCGACGGGTCCTCATCCCTGCCTTCCCAGATCGAGAGCTGCGCCCAGACCTCGGTCAGCCTCCCTACAGGGCAGCCAACTCCCCCCACCACCCCGGAGCCTGTGTCCAATGTCAGCTCGGCCAAATCCTCCCCGCGGAAGAtcgggagagagaaggggaagaaGGTGGACAAGTACAGCACGGAGTACCGACAGAGGCGAGAGAGGAATAACGTTGCAGTGAGGAAAAGCAGGGACAAAGCTAAGAGGCGCAACTTAGATATGCAGCAGAAGCTGCTTGAACTGAGCTCTGAAAACGACAGGCTTCATAAAACTGTCGAGCAGCTAACCAGAGAGCTCTCCGGGCTCAGAGATTTTTTCAAGCAGATGCCTAGCTCTTCCTTTGCGGGCTCCACGAGTGCAGAGAGACGGTGACACTCATTTTATGAACTGAGCTTTTAGGAGACATACCTCAACAGACATTTCGTTTTTACCATCTGTACCAGATGTATTTTAAGCTTACCATAATGGCACTGGAAAATATGATGTTGCTGCCATATTTGTGGGATTTCTCTCTGTATTAAATTATTTTACCACTGCATTTACATGATGTTATACCTGATATGGTACATGTTTTTATAATTCCAAACTTTGTATAAGAGCCAGAGCATGATCTTTTATAGTTTGTATGAATCcttgaaaacatttttgtttatggAATCTATAATAAAATTGCTGAAAGGTGCAGAAA

Function

symbol description
cebpd Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including chordo neural hinge; digestive system; notochord; periderm; and yolk syncytial layer. Orthologous to human CEBPD (CCAAT enhancer binding protein delta).

NR:

description
CCAAT/enhancer binding protein delta2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10050 CEBPD; CCAAT/enhancer binding protein (C/EBP), delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815194.1 True 1417 mRNA 0.50 1 21797438 21798854

Neighbor

gene id symbol gene type direction distance location
snai2 snai2 coding upstream 87795 21707253 ~ 21709643 (+)
pcmtd1 pcmtd1 coding upstream 136930 21648818 ~ 21660508 (+)
st18 NA coding upstream 154942 21602052 ~ 21642496 (+)
rb1cc1 rb1cc1 coding upstream 202201 21581280 ~ 21595237 (+)
gbx1 gbx1 coding upstream 353313 21441760 ~ 21444125 (+)
klhl14 klhl14,LOC102797134 coding downstream 100714 21899568 ~ 21916897 (+)
cacna1eb NA coding downstream 122797 21921651 ~ 21982046 (+)
LOC120568173 LOC103396305,LOC101065160,LOC103364109,LOC100698908,LOC104955975 coding downstream 184160 21983014 ~ 21987482 (+)
LOC120568175 LOC104935914,LOC104955993,LOC103364110,LOC100699175,LOC102214823 coding downstream 196746 21995600 ~ 22002864 (+)
znf830 znf830 coding downstream 217068 22015922 ~ 22017307 (+)
G116746 NA non-coding upstream 134968 21614100 ~ 21662470 (+)
G116723 NA non-coding upstream 297044 21454330 ~ 21500394 (+)
G116657 NA non-coding upstream 471175 21270751 ~ 21326263 (+)
G116616 NA non-coding upstream 553045 21243641 ~ 21244393 (+)
G116583 wnt9a non-coding upstream 663426 21129608 ~ 21134012 (+)
G116794 mapre2 non-coding downstream 35612 21834466 ~ 21838752 (+)
G116857 NA non-coding downstream 136665 21935519 ~ 22020278 (+)
LOC120568180 NA non-coding downstream 226259 22025113 ~ 22036950 (+)
LOC120568856 NA non-coding downstream 435965 22234819 ~ 22238505 (+)
LOC120568744 NA non-coding downstream 508913 22307767 ~ 22314947 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 882116 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 1421805 20373227 ~ 20375633 (+)
emilin2a NA other upstream 2332057 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2745196 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 3071991 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 72099 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 809195 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 842656 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 1634771 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 1793878 23592732 ~ 23685804 (+)

Expression


Co-expression Network