pcmtd1 (pcmtd1)


Basic Information

Item Value
gene id pcmtd1
gene name pcmtd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21648818 ~ 21660508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815402.1
ACCACGTGATGTGTGTTTACATCCTCTCAGCTGCTtcggtcttcttcttcttcacttcgACACAACGGCTCGCCGTTATTAGTTTAGCTACCTTTACATCCGAACCAGCTTAGCACAGTTTACTAGCAGTTTGCCTTTAAAAAGGAGGCTGCTAACGTCTGAAAGTCACTGACCGTCGCATTGCACAGAGCATCCAGTTACAAGGAGTAAGTAAATGCGACACGGCATTGTTGTCACTTGCTGCCTGGACATGACCGAAGTCTAAACTCTGACCCTCGAGGAGTCACAGCGGCAGCATCCTTTAGGTCAGCCGTTCATCTCCATGCCACTCTGAGGAGGAATCACTCATCCTGAGTACGTGTTTGGCCCTtgtttcctcttctcttttcaCCATGGGGGGAGCCGTGAGCGCTGGGGAGGACAATGACGACCTCATTGATAATCTGAAGGAGGCCCAGTATATTCGCACAGAAAAAGTGGAACAGGCTTTCCGAGCCATAGACCGTGGTGACTACTATCTGGACGGCTACAGGGACAGTGCCTACAAAGACTTGGCGTGGAAGCATGGAAACATCCACCTGTCTGCTCCGTGTATATACTCTGAGGTGATGGAGGCCCTCAAACTGCAGCCTGGACTTTCTTTCCTCAATCTGGGCAGTGGAACTGGTTACCTGAGCACAATGGTTGCCCTTATCATAGGGCCATTTGGTGTGAACCATGGAGTTGAGCTCCATAAGGACGTAGTTGAATATGCCAGAGAGAAACTGGATGATTTCATAAAGAATAGTGACAGCTTTGATAAGTTTGAGTTCTGTGAACCCGTCTTTGTGGTGGGGAATTGCCTTGAAATCTCAGCAGACAGTCACCAATACGATCGCATCTATTGTGGCGCAGGAGTGCAGAAAGACCATGAAAATTACATGAAAGTACTGCTCAAAATTGGAGGCATTCTGGTGATGCCTATAGAGGATCAGCTGACCCAGATAACCAGGACTGGTCAGTGCACATGGGAGAGTAAAAACATCTTGGCGGTGTCCTTTGCCCCCTTGGTCCAGCAGAGCAGAGCTGATGGAGAGAAGCCTGACGCTGTCCAGCTGCCCCCAGTGACTGTCCGCAGCCTTCAGGATCTGTCTCGGATCTACATACGCCGCACTCTCAGAAACCTGGCCAATGAGGATAGTCAAGGGAAGGGGATGGTGCAAAGAGTTCCCCAGAAGCGCAAACGCAGGCGCTGCCGACGGCGACGCATCAACACCTACGTTTTTGTAGGCAACCAGCTGATCCCTCAAATGGTGGAgagcgaggaggaggagcacGCTGAGGAAGAACACAaggaagtggaggaggaggaagaggaggaaagagaccTTGGCGACATTGAAATCCTCAAGCAAGTGAGCGTGTTGAGAGACCAAATAATGGCTTTACCGCTGCCTGAGTCACTTAAAGCATTTTTGCTGTATTACAGAGAGAAATGACTGATGAACTCGATGTCCACTCTTAATGGGTGCAGGGCCTGCTGAaatgctttttcctcttttctgtaCAAATGTAGCATTATTTCCATTAAATCTTGATGGCAAAACTGTAATGGAAAGATACGTCAGATAATATTGGATAATAATGTTATGATTGTCACGAGTTGTTAGTTTTTGTCGACAATTTTCTTTTGAgttgtatgtaaaaaaataaataaaaaaattaaataaaatgtaaaaagtatacCTAAAGGACATAGTTTCAGAAGCCCATTTTGAGATTCAGATTTCACAATTTCAGGACTTCTGCAGAAAtgtgcagataaaaaaaaaaaaaaaaa
>XM_039815403.1
ACCACGTGATGTGTGTTTACATCCTCTCAGCTGCTtcggtcttcttcttcttcacttcgACACAACGGCTCGCCGTTATTAGTTTAGCTACCTTTACATCCGAACCAGCTTAGCACAGTTTACTAGCAGTTTGCCTTTAAAAAGGAGGCTGCTAACGTCTGAAAGTCACTGACCGTCGCATTGCACAGAGCATCCAGTTACAAGGAGTCACTTGCTGCCTGGACATGACCGAAGTCTAAACTCTGACCCTCGAGGAGTCACAGCGGCAGCATCCTTTAGGTCAGCCGTTCATCTCCATGCCACTCTGAGGAGGAATCACTCATCCTGAGTACGTGTTTGGCCCTtgtttcctcttctcttttcaCCATGGGGGGAGCCGTGAGCGCTGGGGAGGACAATGACGACCTCATTGATAATCTGAAGGAGGCCCAGTATATTCGCACAGAAAAAGTGGAACAGGCTTTCCGAGCCATAGACCGTGGTGACTACTATCTGGACGGCTACAGGGACAGTGCCTACAAAGACTTGGCGTGGAAGCATGGAAACATCCACCTGTCTGCTCCGTGTATATACTCTGAGGTGATGGAGGCCCTCAAACTGCAGCCTGGACTTTCTTTCCTCAATCTGGGCAGTGGAACTGGTTACCTGAGCACAATGGTTGCCCTTATCATAGGGCCATTTGGTGTGAACCATGGAGTTGAGCTCCATAAGGACGTAGTTGAATATGCCAGAGAGAAACTGGATGATTTCATAAAGAATAGTGACAGCTTTGATAAGTTTGAGTTCTGTGAACCCGTCTTTGTGGTGGGGAATTGCCTTGAAATCTCAGCAGACAGTCACCAATACGATCGCATCTATTGTGGCGCAGGAGTGCAGAAAGACCATGAAAATTACATGAAAGTACTGCTCAAAATTGGAGGCATTCTGGTGATGCCTATAGAGGATCAGCTGACCCAGATAACCAGGACTGGTCAGTGCACATGGGAGAGTAAAAACATCTTGGCGGTGTCCTTTGCCCCCTTGGTCCAGCAGAGCAGAGCTGATGGAGAGAAGCCTGACGCTGTCCAGCTGCCCCCAGTGACTGTCCGCAGCCTTCAGGATCTGTCTCGGATCTACATACGCCGCACTCTCAGAAACCTGGCCAATGAGGATAGTCAAGGGAAGGGGATGGTGCAAAGAGTTCCCCAGAAGCGCAAACGCAGGCGCTGCCGACGGCGACGCATCAACACCTACGTTTTTGTAGGCAACCAGCTGATCCCTCAAATGGTGGAgagcgaggaggaggagcacGCTGAGGAAGAACACAaggaagtggaggaggaggaagaggaggaaagagaccTTGGCGACATTGAAATCCTCAAGCAAGTGAGCGTGTTGAGAGACCAAATAATGGCTTTACCGCTGCCTGAGTCACTTAAAGCATTTTTGCTGTATTACAGAGAGAAATGACTGATGAACTCGATGTCCACTCTTAATGGGTGCAGGGCCTGCTGAaatgctttttcctcttttctgtaCAAATGTAGCATTATTTCCATTAAATCTTGATGGCAAAACTGTAATGGAAAGATACGTCAGATAATATTGGATAATAATGTTATGATTGTCACGAGTTGTTAGTTTTTGTCGACAATTTTCTTTTGAgttgtatgtaaaaaaataaataaaaaaattaaataaaatgtaaaaagtatacCTAAAGGACATAGTTTCAGAAGCCCATTTTGAGATTCAGATTTCACAATTTCAGGACTTCTGCAGAAAtgtgcagataaaaaaaaaaaaaaaaa

Function

symbol description
pcmtd1 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Is expressed in central nervous system. Orthologous to human PCMTD1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815402.1 True 1819 mRNA 0.46 6 21648818 21660508
XM_039815403.1 False 1793 mRNA 0.46 6 21648818 21660508

Neighbor

gene id symbol gene type direction distance location
st18 NA coding upstream 6322 21602052 ~ 21642496 (+)
rb1cc1 rb1cc1 coding upstream 53581 21581280 ~ 21595237 (+)
gbx1 gbx1 coding upstream 204693 21441760 ~ 21444125 (+)
asb10 asb10 coding upstream 208885 21434967 ~ 21439933 (+)
zgc:92591 LOC103479695,LOC101468538,LOC101063387,LOC100696317,LOC105935710,LOC106963471,LOC103358166 coding upstream 220139 21428019 ~ 21428679 (+)
snai2 snai2 coding downstream 46745 21707253 ~ 21709643 (+)
cebpd cebpd coding downstream 136930 21797438 ~ 21798854 (+)
klhl14 klhl14,LOC102797134 coding downstream 239060 21899568 ~ 21916897 (+)
cacna1eb NA coding downstream 261143 21921651 ~ 21982046 (+)
LOC120568173 LOC103396305,LOC101065160,LOC103364109,LOC100698908,LOC104955975 coding downstream 322506 21983014 ~ 21987482 (+)
G116723 NA non-coding upstream 148424 21454330 ~ 21500394 (+)
G116657 NA non-coding upstream 322555 21270751 ~ 21326263 (+)
G116616 NA non-coding upstream 404425 21243641 ~ 21244393 (+)
G116583 wnt9a non-coding upstream 514806 21129608 ~ 21134012 (+)
G116538 NA non-coding upstream 618322 21021631 ~ 21030496 (+)
G116794 mapre2 non-coding downstream 173958 21834466 ~ 21838752 (+)
G116857 NA non-coding downstream 275011 21935519 ~ 22020278 (+)
LOC120568180 NA non-coding downstream 364605 22025113 ~ 22036950 (+)
LOC120568856 NA non-coding downstream 574311 22234819 ~ 22238505 (+)
LOC120568744 NA non-coding downstream 647259 22307767 ~ 22314947 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 733496 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 1273185 20373227 ~ 20375633 (+)
emilin2a NA other upstream 2183437 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2596576 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2923371 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 210445 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 947541 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 981002 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 1773117 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 1932224 23592732 ~ 23685804 (+)

Expression


Co-expression Network