cdh2 (cdh2,LOC103371087)


Basic Information

Item Value
gene id cdh2
gene name cdh2,LOC103371087
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22964585 ~ 23026747 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815631.1
ATGCACTCACTACACGAGGGCAGCGGTCTGTTTCTGCTGGCGGTCTTGGCAGGACTGCAGATTGCAGCAGAGGGCAGGGGCACCCCACCATGCAGGCCAGGCTTCTCTGAAGATGTATACAAGGTTGTGGTGCCAGATATCACAGAGAAAGGACATCCCCTTTTCAACGTGAGGTTTGTCGACTGTGGCCGAGGTGGTCTGGTGCGGTTTGAATGCAGTAACCCATCGGACTTCCGAATAGAGGCTGACGGAGTAGTTTACGCTGCCAGGAGCATTGAGCACTCTACGCTCCCTGCGTCACCGTTGCTGATCAAGGCCAGTGACACCATCACTCAGCAGCAATGGGTGGCCCAAGTCAGGTTGAAACCCTCCACACACTCCAGCCAGCAGGTCCAGCAAGCTGCTGCCCCTCCAGTCACGTCTAAGGATTTGAAGGAAATAGTGTTTCCATCACGAAACACGGACAGCCAACTCAAACGCATGAAGAGAGACTGGGTCATCCCCCCAATCAACGTCCCAGAGAACTCACGAGGCCCATTCCCACAAGAGCTTGTCCGGATCCGGTCGGACCACGACAAAAACCGGTCCCTCAGATACAGTGTGACAGGCCCTGGCGCTGACCAGCCACCCAATGGCATCTTCATCATTGACCCGATCTCTGGAGAGCTTTCTGTCAACAAGCCCCTGGATCGAGAGCACATCTCCAACTTCCATCTGAGAGCTCATGCAGTGGACCTGAACGGCAACCAGGTAGAAAACCCTATTGACATTGTGATCAATGTGATCGACATGAACGACAACAGACCCGAGTTCACTCATCAGATCTGGAACGGCACTGTTCCAGAGGGTTCCAAGCCAGGAACATTTGTTATGACAGTGACTTCTGTTGACAAAGATGACCCCAAAACAGCTAATGGGATGCTGCGCTACAAGATCCTATCTCAGAATCCAGAGAGTCCGACCTCCAATATGTTCACCATCAACAATAAAACAGGAGGCATCATTACGGTGGCAGCAGGCCTGGACAGAGAGAAAGTTCCTCAGTACACACTGATCATCCAGGCCACTGACATGGAGGGCAACCCCATGTACGGCCTCTCCAACACAGCCACTGCTGTCATCAGAGTCACTGACGTTAATGacaatccaccagagtttactGCTGAGACGTTTTTCGGCGAGGTGCCTGAAAACCGAGTGAATGTCATTGTGGCTAACCTGACGGTGACTGACAAGGACCAGCCCAACACGCCGGCCTGGAACGCTGTCTACAAAATCACCGGGGGCGACCCCACTGGCAGGTTTTCTGTGCCCACTGATCCTACCACTAACGAGGGCCTGGTAACGGTCGTCAAGCCTATTGACTATGAAATCAGTAGGACGTATGTGCTGACAGTGGAAGCGAGGAACGAGGTTCCCCTGGCCAGAGGCATCCACTCTCCTCGCCAGTCCACCGCCACTGTCTCCATCAGAGTGATAGATGTCAACGAGAGTCCCTACTTCGAGCCCAACCCCAAACTCATTAAACTGGAGGAGGGAATGATGCCTGAGTCAACACTGACCACCTTCACTGCACAGGACCCTGATCGCTTCATGCAGCAAAGCATCAGataCTCCAAACTCTCAGATCCAGCCAACTGGCTAAGGATTGACCCGAACACCGGTCGTATCACAACTATTGCCATTTTGGACCGAGAGTCGCCCTTTGTGAAGAACAGCTTGTACAATGCAACATTCATGGCTTCTGACAACGGTGTACCTCCAGCAAGTGGCACAGGTActctccagatctacctgctggaTATCAACGACAACGCTCCCAAGGTGTTCCCTCAGGAGACAGAGATATGTGAAAAGCCAGAGCCAAATGCCATCAACATCACTGCGCTCGATGGAGACCTGAACCCCAACGCTGGGCCGTTTGCCTTTGAGTTAGCCCACCGGCCCGCTGATGTTAGGAGAAACTGGACCATCACAAGAGTCAGCGGTGACTATGCTCAGGTGAGCCTGAAGATTGGCTTCCTTGAAAGCGGTATCTATGAGCTCCCCATCATAATCACAGACTCAGGCAACCTGCCCATGTCCAACACCTCCTATCTGCGGATTAAAGTGTGCCAGTGCGACATCAATGGAGACTGCACTGACCAGCAACACATCATGGCTGCCGGTCTGGGCACTGGTGCCATCATCTCCATTCTCCTCTGCATCATCATCCTCCTCATTCTCGTGCTGATGTTTGTTGTGTGGATGAAGCGCCGCGATAAAGAGCGTCAGGCCAAGCAGCTCCTCATCGACCCTGAAGACGATGTGAGAGACAACATTCTCAAGTATGATGAGGAaggtggaggagaggaagatcagGATTACGACCTTAGTCAGCTCCAGCAGCCGGACACGATAGAGCCTGATGCCATCAAGCCAGTGGGAATCCGTCGTCTAGACGAGAGACCCCTCCACCCTGAGCCTCAGTACCCCATGAGGTCAGCAGCACCCCACCCTGGAGACATCGGAGACTTCATCAATGAGGGACTTAAGGCAGCAGACAACGACCCCACCGCTCCTCCCTACGACTCCCTGCTCGTGTTCGACTACGAGGGCAGCGGCTCCACAGCTGGCTCCCTAAGCTCCCTCAACTCCTCCAGCAGCGGGGGCGACCAGGACTACGATTACCTCAACGACTGGGGCCCTCGCTTTAGAAAACTGGCAGACATGTACGGTGGAAGTGATGACTAGGACACAGCCGCTCCgtgaaagatgaaaaaaggatgaaaaaaataacatgaagaaaaggaaagatTTCCTGTTGATGGACACGGACAGCTTCTGATATTCCCTAAGAGAGTGACGGAACTGTgacagaaaagaaacaaaaaataaacactgattcagaatttttttcaaaaacaaccAACCTAGGCTTATTGTTGTAGTCTACGCATACATATGCTTGTTGAAAGCTTAGGCATAGGCTGTGGTCCAGTTATGGAGGTTGTGGGAGGGAACACTGGTGGACTGTCGCCACTTGGATTGTTGGTATTGAATGCGCTCAGTTACACTTGAATTTCACAGTACAGAAGCACTGGGATATAATGTgcctttttgtacatttttttggATCTAAATGATTAGTTTTATGTTCAAGGCTTTAATGGTACTGACTTTTGGAGTGATTTCAAGCAAAGTATGTTACACTCTGGTATGCTTCtacatgctttttttctttggttACACAACGCTCCTGTTTGTTGaagattatttaaataaactacaaagaCGAAGAAAGGAGGAAGGATCATCTGTTAGCTTGGatggaaagaaaaacaattaaGAACAGCACTGTACAGTACGCTAGACTTCTAGACTTTTTcactaaaaaattaaaattatgcAGCTGGTTGCAAATAAAGGGAGTTATGAATCATACATTTGTAgcagatttgtttttcttttttttctgaagtgatgtagtattttacaaaaaaaaaaaatggttttggtCTAATCTATGTACACTTCATTTGCCTTAGTCATCATCTGATATTTTCAACTTTACTTCACTGTAAAAAGATGTGTgtacataatgttttttttttctttatctttttcttttgatgTAGTATATGAAGAAGTGCAAAAAGTTCCAAACCTGTAAATGTATAATTTGGACTACAAATTCAagttttttgcatgtttttatcttttcatgACAACAAAAACGAAAACTGTTGTTTCCCAAATttatttacaaagtgaaaaaaataaaaaatctgggTGACATTAAATGTGTAGAAGTTAAGAGAGTTTTTGTATAAAACGTGGGGAAAAACATTGATAAAAATGGAAAAGTAGTGATCTTGTCAGCACAACTGTTGAATTTGTACCAAAAAGGGgtggggtgggtggggtggggtgggatgACATGCTAGGCACTAATTACTGAATCAGCTTTAAGACTGGAAAATGTTTTGGACTTAAGCCTTGAGGATAACCATGTGTACTGGAAAACAAATGATCCATCTCTGACCCCAACCATCCAAATAAAATGCTAATTTTGGAGCTAAAAACTAAA

Function

symbol description
cdh2 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within several processes, including animal organ development; embryonic morphogenesis; and nervous system development. Located in perinuclear region of cytoplasm and presynaptic membrane. Part of catenin complex. Is expressed in several structures, including germ ring; immature eye; mesoderm; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in agenesis of corpus callosum, cardiac, ocular, and genital syndrome; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 14. Orthologous to human CDH2 (cadherin 2).

NR:

description
PREDICTED: cadherin-2-like

GO: NA

KEGG:

id description
K06736 CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815631.1 True 4069 mRNA 0.47 16 22964585 23026747

Neighbor

gene id symbol gene type direction distance location
dsc2l NA coding upstream 98084 22827876 ~ 22866501 (+)
LOC120568988 LOC108239677,LOC104929325,LOC107383927,LOC104949490,LOC101473957,LOC105935174,LOC106958824,LOC100702414,LOC103371147,LOC107092425 coding upstream 152688 22807164 ~ 22811897 (+)
LOC120568105 LOC104949489,LOC103371148,LOC105899400,LOC102785858,LOC107708605 coding upstream 159818 22764652 ~ 22804767 (+)
LOC120569076 LOC103371152,LOC102785856 coding upstream 275812 22687094 ~ 22688773 (+)
LOC120567970 NA coding upstream 332390 22623529 ~ 22632195 (+)
aqp4 aqp4 coding downstream 95776 23122523 ~ 23128952 (+)
LOC120568942 kctd1,LOC103479566,LOC103373355,LOC106534090,LOC108239680 coding downstream 107509 23134256 ~ 23147417 (+)
ss18 ss18 coding downstream 150994 23177741 ~ 23189571 (+)
LOC120568373 znf521 coding downstream 185751 23212498 ~ 23302789 (+)
LOC120569134 NA coding downstream 298555 23325302 ~ 23343895 (+)
G117128 NA non-coding upstream 46479 22917876 ~ 22918106 (+)
G117082 dsp non-coding upstream 210095 22752252 ~ 22754490 (+)
G117077 NA non-coding upstream 216853 22747120 ~ 22747732 (+)
G116978 NA non-coding upstream 491745 22465335 ~ 22472840 (+)
LOC120568744 NA non-coding upstream 649638 22307767 ~ 22314947 (+)
G117187 NA non-coding downstream 346963 23373710 ~ 23374199 (+)
G117190 NA non-coding downstream 350386 23377133 ~ 23378516 (+)
G117219 NA non-coding downstream 419604 23446351 ~ 23462300 (+)
G117220 NA non-coding downstream 441873 23468620 ~ 23519769 (+)
G117221 LOC101467149 non-coding downstream 445800 23472547 ~ 23473684 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other upstream 283292 22641510 ~ 22681293 (+)
LOC120567968 NA other upstream 344454 22608049 ~ 22620131 (+)
LOC120568354 NA other upstream 1067194 21870953 ~ 21897391 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 2049263 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 2588952 20373227 ~ 20375633 (+)
kdsr kdsr,LOC102792240 other downstream 406878 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 565985 23592732 ~ 23685804 (+)
G117319 LOC101487892,LOC104941256 other downstream 824132 23850879 ~ 23855157 (+)
G117353 LOC103366712 other downstream 879123 23905870 ~ 23908401 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other downstream 885917 23912664 ~ 23914498 (+)

Expression


Co-expression Network