LOC120568942 (kctd1,LOC103479566,LOC103373355,LOC106534090,LOC108239680)


Basic Information

Item Value
gene id LOC120568942
gene name kctd1,LOC103479566,LOC103373355,LOC106534090,LOC108239680
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23134256 ~ 23147417 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816700.1
GCAGGAAGAGTGAGGGTGTtgtaaatgcagaaaaaaaaaaatctttattttattttataaaaacataaactcAACAACGACTAAGGCACTGCTGCTGTGATCTCTTCCTTTGCTGGGAGTTTTATTCTGCAGATTGGTTTAGACTGGGGCAGAGACATGAGCTAATTGTATCCTGATCTTTGCCTTGAGGGGTTTCGGAGCCCTGGAGCAAGTATTCTCTGTATTTTGTTCTGTCTACCTTAGCCAAGCTATTGCATTTCTCACTGGTGTAGGAAGAGAAGCAGATCGTGGGCCAAATCGGAGGGAAAAGGTGCATAAATAGATACTTTATGCCGCTCTATGTTTCAGGTTCGTTGGGGAAAAGCCGACCTCGTCCTATCTGTTAACCTCAACGTCTGCGCTGTAATGGACGAAACGGACATCATGGACTTAACGCATCAGAAAGCGAGAAAGCGACCGCGTCCAATCAGTTCTGTGGATGAGTCCGTGCACGCTTCCCTCAAACGGCTCCCGATGCGAGCGGCGGAGTGCAGGGAGCCCTCACTGATGTTCTCAGTCAGAGGAGAGCCGGTCCCCGCAGCATCTCTCAAGCAAAATGACCATTCGGTGACTTCCTCTCCAAACACAGTGATGCCGGCGCAGgATCATCGCTCCAGCATGTCCAGGCCCATGATCACACGGTCACCGGTGTCTCCCTTGAGCAACCAGGGCATCCCAGCACCTGCACAGCTCACCAAGTCCAACGCCCCTGTGCACATTGATGTGGGCGGACACATGTACACCAGCAGTCTGGCCACCTTAACAAAATTCCCAGAATCCCGAATTGGTCGTCTCTTTGATGGCACAGAGCCTATAGTCCTGGACAGCCTGAAGCAGCACTACTTCATTGACAGGGATGGACACATGTTCCGCTACATCCTCAACTTCCTCAGGACGTCCAAGCTTCTCATCCCAGAAGACTTCAAAGACTACAGTCTGCTGTACGAGGAGGCGCGGTACTTCCAGCTGCAGCCAATGCTTGCTGAGCTGGAGCGCTGGCGTCAGGACCAGGAGCTAGGCCGGGTGTCGCGCCCCTGCGAGTGCTTGGTGGTGCGCGTTGCACCTGACTTGGGCGAGAGGATCGCGCTCAGCGGTGACAAGGCCCTGATTGAAGACGTGTTTCCGGAAATCGGTGACGTCATGTGCAACTCTGTCAATGCCGGCTGGAACCATGACTCCACGCACGTCATCCGCTTCCCACTTAATGGATACTGCCACCTCAACTCTGTCCAGGTTCTAGAGCGCCTGCAACAACGTGGCTTCGAGATCGCCGGCTCCTGTGGTGGAGGCGTGGACTCATCCCAATTCAGCGAGTACGTCCTGAGGAGGGAACTGAGGAGGACGAGTCAGCGAGGATCCAATTCAAACAGGATAAAGCAGGAGCAGCTGGACTAGAAACCTCCCGAGCTGTAGGAGGTGCTAGACTTTTCTGTGGCGTCCAAACGCTCAATGCTGCAGAGCTCTGTGGACTCTGTTTTTCTCCGTTTTCCttgttaatgtttttgttttcttaaacTTGAGAACCATCTAGAGAATAAATATGAGGTGCAACAGGAGATTTTTTTGCCATAAGAAGATACAAGACATTTGAGATTGCACAGACATTTGTGAATGTCTAGCCCCCATAAACCAATTTAAAAAGGATTTATATACGCTGGATCCCCAAACAAAGTTTGTTTTAAAACTTGGAGCCTACATTAGGTTGACTATGATTTCTATTATACCCATATAAATTTAAAGGAAGGCTTTTATTGCTTACGTAGTATGTTGCATAGCTTGTCACCAATGACTTGATTTTGATGTCTCACTGGCAAATTGGCAAAGTCTGTTTTTATCCCTCGCTGTAAAAAGGTCACTAATGTGTTGCTTACAGTACAGAATGTCTCAGTTGTCATAAACCGTTAGTTTCAACAAAGCATCTTTTTTCACAACTAACATGATGTTGAATATTATGATACcaatgaagtgtttttttttactttaatgaaagttattttattggattatgCCATGAAATATAGTTGACATTAGTATCATCAAAATAAGACCCATCCATACgcagtacagaaaataattCAGTAAACTATTATGTCACAACATTTGCCTCTTTGCGTAGTATGAACTACTAACCCCCATGTGCTAACTTGGGAATTATTTAATTGGATCATAATATTCCCCTGAGTCATGACCTGTAAATTCCTTTcattgtatatgtgtttgtgttttttacatTGAATCTTTTTAAAGCGATTTGTTGCCTCTAACATGACTGAACAGATTAAAGCTTAACGTACAACCGACTCCAAGATCACTTTTACTTGTAGCACATATTGATATGAAGTTGGATATATAGTATTTCTAAGATGACTGACCCACCTACGCTCCCTAGATTTGAGTAaagaggaatgtagcacaaaatgtgaaataaatctCAACTTAAGTTGT
>XM_039816701.1
AAGAGTGAGGGTGTtgtaaatgcagaaaaaaaaaaatctttattttattttataaaaacataaactcAACAACGACTAAGGCACTGCTGCTGTGATCTCTTCCTTTGCTGGGAGTTTTATTCTGCAGATTGGTTTAGACTGGGGCAGAGACATGAGCTAATTGTATCCTGATCTTTGCCTTGAGGGGTTTCGGAGCCCTGGAGCAAGTATTCTCTGTATTTTGTTCTGTCTACCTTAGCCAAGCTATTGCATTTCTCACTGGTGTAGGAAGAGAAGCAGATCGTGGGCCAAATCGGAGGGAAAAGGTGCATAAATAGATACTTTATGCCGCTCTATGTTTCAGGCCCCTTTGCCTTCTGCGAGGGATTCTGGAGTTGAATTTTAAAACTATGTATGACTGCTGCCTGCGCTTATCAGCGCGTGCACAAGCGGCATGCAAATCAGACCAGGATCACACACCGCATTGGAGGCCTACACTCAAAGgATCATCGCTCCAGCATGTCCAGGCCCATGATCACACGGTCACCGGTGTCTCCCTTGAGCAACCAGGGCATCCCAGCACCTGCACAGCTCACCAAGTCCAACGCCCCTGTGCACATTGATGTGGGCGGACACATGTACACCAGCAGTCTGGCCACCTTAACAAAATTCCCAGAATCCCGAATTGGTCGTCTCTTTGATGGCACAGAGCCTATAGTCCTGGACAGCCTGAAGCAGCACTACTTCATTGACAGGGATGGACACATGTTCCGCTACATCCTCAACTTCCTCAGGACGTCCAAGCTTCTCATCCCAGAAGACTTCAAAGACTACAGTCTGCTGTACGAGGAGGCGCGGTACTTCCAGCTGCAGCCAATGCTTGCTGAGCTGGAGCGCTGGCGTCAGGACCAGGAGCTAGGCCGGGTGTCGCGCCCCTGCGAGTGCTTGGTGGTGCGCGTTGCACCTGACTTGGGCGAGAGGATCGCGCTCAGCGGTGACAAGGCCCTGATTGAAGACGTGTTTCCGGAAATCGGTGACGTCATGTGCAACTCTGTCAATGCCGGCTGGAACCATGACTCCACGCACGTCATCCGCTTCCCACTTAATGGATACTGCCACCTCAACTCTGTCCAGGTTCTAGAGCGCCTGCAACAACGTGGCTTCGAGATCGCCGGCTCCTGTGGTGGAGGCGTGGACTCATCCCAATTCAGCGAGTACGTCCTGAGGAGGGAACTGAGGAGGACGAGTCAGCGAGGATCCAATTCAAACAGGATAAAGCAGGAGCAGCTGGACTAGAAACCTCCCGAGCTGTAGGAGGTGCTAGACTTTTCTGTGGCGTCCAAACGCTCAATGCTGCAGAGCTCTGTGGACTCTGTTTTTCTCCGTTTTCCttgttaatgtttttgttttcttaaacTTGAGAACCATCTAGAGAATAAATATGAGGTGCAACAGGAGATTTTTTTGCCATAAGAAGATACAAGACATTTGAGATTGCACAGACATTTGTGAATGTCTAGCCCCCATAAACCAATTTAAAAAGGATTTATATACGCTGGATCCCCAAACAAAGTTTGTTTTAAAACTTGGAGCCTACATTAGGTTGACTATGATTTCTATTATACCCATATAAATTTAAAGGAAGGCTTTTATTGCTTACGTAGTATGTTGCATAGCTTGTCACCAATGACTTGATTTTGATGTCTCACTGGCAAATTGGCAAAGTCTGTTTTTATCCCTCGCTGTAAAAAGGTCACTAATGTGTTGCTTACAGTACAGAATGTCTCAGTTGTCATAAACCGTTAGTTTCAACAAAGCATCTTTTTTCACAACTAACATGATGTTGAATATTATGATACcaatgaagtgtttttttttactttaatgaaagttattttattggattatgCCATGAAATATAGTTGACATTAGTATCATCAAAATAAGACCCATCCATACgcagtacagaaaataattCAGTAAACTATTATGTCACAACATTTGCCTCTTTGCGTAGTATGAACTACTAACCCCCATGTGCTAACTTGGGAATTATTTAATTGGATCATAATATTCCCCTGAGTCATGACCTGTAAATTCCTTTcattgtatatgtgtttgtgttttttacatTGAATCTTTTTAAAGCGATTTGTTGCCTCTAACATGACTGAACAGATTAAAGCTTAACGTACAACCGACTCCAAGATCACTTTTACTTGTAGCACATATTGATATGAAGTTGGATATATAGTATTTCTAAGATGACTGACCCACCTACGCTCCCTAGATTTGAGTAaagaggaatgtagcacaaaatgtgaaataaatctCAACTTAAGTTGT
>XM_039816702.1
AGAGTGAGGGTGTtgtaaatgcagaaaaaaaaaaatctttattttattttataaaaacataaactcAACAACGACTAAGGCACTGCTGCTGTGATCTCTTCCTTTGCTGGGAGTTTTATTCTGCAGATTGGTTTAGACTGGGGCAGAGACATGAGCTAATTGTATCCTGATCTTTGCCTTGAGGGGTTTCGGAGCCCTGGAGCAAGTATTCTCTGTATTTTGTTCTGTCTACCTTAGCCAAGCTATTGCATTTCTCACTGGTGTAGGAAGAGAAGCAGATCGTGGGCCAAATCGGAGGGAAAAGGTGCATAAATAGATACTTTATGCCGCTCTATGTTTCAGgATCATCGCTCCAGCATGTCCAGGCCCATGATCACACGGTCACCGGTGTCTCCCTTGAGCAACCAGGGCATCCCAGCACCTGCACAGCTCACCAAGTCCAACGCCCCTGTGCACATTGATGTGGGCGGACACATGTACACCAGCAGTCTGGCCACCTTAACAAAATTCCCAGAATCCCGAATTGGTCGTCTCTTTGATGGCACAGAGCCTATAGTCCTGGACAGCCTGAAGCAGCACTACTTCATTGACAGGGATGGACACATGTTCCGCTACATCCTCAACTTCCTCAGGACGTCCAAGCTTCTCATCCCAGAAGACTTCAAAGACTACAGTCTGCTGTACGAGGAGGCGCGGTACTTCCAGCTGCAGCCAATGCTTGCTGAGCTGGAGCGCTGGCGTCAGGACCAGGAGCTAGGCCGGGTGTCGCGCCCCTGCGAGTGCTTGGTGGTGCGCGTTGCACCTGACTTGGGCGAGAGGATCGCGCTCAGCGGTGACAAGGCCCTGATTGAAGACGTGTTTCCGGAAATCGGTGACGTCATGTGCAACTCTGTCAATGCCGGCTGGAACCATGACTCCACGCACGTCATCCGCTTCCCACTTAATGGATACTGCCACCTCAACTCTGTCCAGGTTCTAGAGCGCCTGCAACAACGTGGCTTCGAGATCGCCGGCTCCTGTGGTGGAGGCGTGGACTCATCCCAATTCAGCGAGTACGTCCTGAGGAGGGAACTGAGGAGGACGAGTCAGCGAGGATCCAATTCAAACAGGATAAAGCAGGAGCAGCTGGACTAGAAACCTCCCGAGCTGTAGGAGGTGCTAGACTTTTCTGTGGCGTCCAAACGCTCAATGCTGCAGAGCTCTGTGGACTCTGTTTTTCTCCGTTTTCCttgttaatgtttttgttttcttaaacTTGAGAACCATCTAGAGAATAAATATGAGGTGCAACAGGAGATTTTTTTGCCATAAGAAGATACAAGACATTTGAGATTGCACAGACATTTGTGAATGTCTAGCCCCCATAAACCAATTTAAAAAGGATTTATATACGCTGGATCCCCAAACAAAGTTTGTTTTAAAACTTGGAGCCTACATTAGGTTGACTATGATTTCTATTATACCCATATAAATTTAAAGGAAGGCTTTTATTGCTTACGTAGTATGTTGCATAGCTTGTCACCAATGACTTGATTTTGATGTCTCACTGGCAAATTGGCAAAGTCTGTTTTTATCCCTCGCTGTAAAAAGGTCACTAATGTGTTGCTTACAGTACAGAATGTCTCAGTTGTCATAAACCGTTAGTTTCAACAAAGCATCTTTTTTCACAACTAACATGATGTTGAATATTATGATACcaatgaagtgtttttttttactttaatgaaagttattttattggattatgCCATGAAATATAGTTGACATTAGTATCATCAAAATAAGACCCATCCATACgcagtacagaaaataattCAGTAAACTATTATGTCACAACATTTGCCTCTTTGCGTAGTATGAACTACTAACCCCCATGTGCTAACTTGGGAATTATTTAATTGGATCATAATATTCCCCTGAGTCATGACCTGTAAATTCCTTTcattgtatatgtgtttgtgttttttacatTGAATCTTTTTAAAGCGATTTGTTGCCTCTAACATGACTGAACAGATTAAAGCTTAACGTACAACCGACTCCAAGATCACTTTTACTTGTAGCACATATTGATATGAAGTTGGATATATAGTATTTCTAAGATGACTGACCCACCTACGCTCCCTAGATTTGAGTAaagaggaatgtagcacaaaatgtgaaataaatctCAACTTAAGTTGT

Function

symbol description
kctd1 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within protein homooligomerization. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in scalp-ear-nipple syndrome. Orthologous to human KCTD1 (potassium channel tetramerization domain containing 1).

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD1 isoform X1

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816700.1 True 2484 mRNA 0.45 6 23134256 23147417
XM_039816701.1 False 2325 mRNA 0.44 6 23134261 23147417
XM_039816702.1 False 2184 mRNA 0.44 5 23134262 23147417

Neighbor

gene id symbol gene type direction distance location
aqp4 aqp4 coding upstream 5304 23122523 ~ 23128952 (+)
cdh2 cdh2,LOC103371087 coding upstream 107509 22964585 ~ 23026747 (+)
dsc2l NA coding upstream 267755 22827876 ~ 22866501 (+)
LOC120568988 LOC108239677,LOC104929325,LOC107383927,LOC104949490,LOC101473957,LOC105935174,LOC106958824,LOC100702414,LOC103371147,LOC107092425 coding upstream 322359 22807164 ~ 22811897 (+)
LOC120568105 LOC104949489,LOC103371148,LOC105899400,LOC102785858,LOC107708605 coding upstream 329489 22764652 ~ 22804767 (+)
ss18 ss18 coding downstream 30324 23177741 ~ 23189571 (+)
LOC120568373 znf521 coding downstream 65081 23212498 ~ 23302789 (+)
LOC120569134 NA coding downstream 177885 23325302 ~ 23343895 (+)
vps4b vps4b coding downstream 275299 23422716 ~ 23433374 (+)
bcl2b bcl2 coding downstream 294174 23441591 ~ 23467811 (+)
G117128 NA non-coding upstream 216150 22917876 ~ 22918106 (+)
G117082 dsp non-coding upstream 379766 22752252 ~ 22754490 (+)
G117077 NA non-coding upstream 386524 22747120 ~ 22747732 (+)
G116978 NA non-coding upstream 661416 22465335 ~ 22472840 (+)
LOC120568744 NA non-coding upstream 819309 22307767 ~ 22314947 (+)
G117187 NA non-coding downstream 226293 23373710 ~ 23374199 (+)
G117190 NA non-coding downstream 229716 23377133 ~ 23378516 (+)
G117219 NA non-coding downstream 298934 23446351 ~ 23462300 (+)
G117220 NA non-coding downstream 321203 23468620 ~ 23519769 (+)
G117221 LOC101467149 non-coding downstream 325130 23472547 ~ 23473684 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other upstream 452963 22641510 ~ 22681293 (+)
LOC120567968 NA other upstream 514125 22608049 ~ 22620131 (+)
LOC120568354 NA other upstream 1236865 21870953 ~ 21897391 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 2218934 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 2758623 20373227 ~ 20375633 (+)
kdsr kdsr,LOC102792240 other downstream 286208 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 445315 23592732 ~ 23685804 (+)
G117319 LOC101487892,LOC104941256 other downstream 703462 23850879 ~ 23855157 (+)
G117353 LOC103366712 other downstream 758453 23905870 ~ 23908401 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other downstream 765247 23912664 ~ 23914498 (+)

Expression


Co-expression Network