G125627 (LOC108259060,LOC105016494,LOC108266561,LOC104955100)


Basic Information

Item Value
gene id G125627
gene name LOC108259060,LOC105016494,LOC108266561,LOC104955100
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20492178 ~ 20521274 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU168969
atttttttttatttacaagtgctgaaaaaaatgacatgggGGACAACCAGTGCAAAATCTGTACATAAATTCAGTTGCAGGTTTCTTATATACACGAGTACTTAACAGGAACGTGAATACACTCTTTCTGTCATGCATGTAACAGAGTTCACAACACAGCAAATGACACAATGTAAAGATGTCTGATTTAGTTGTAGTCCATGATGCTCAGGCTGCTCATTCTCCCAGGGAAAGGTACATAGGACGATCACATTGGAGCCCACAAACTGccttgtgaaaacaaaatggcaGAACAGATGAGGAGCACAACAGAGGAGGACCCATGACTTAATTCACACACCCTCCAGGACATTTAACATAATTAGTCATGGGGAGTTATTACAGCAAGTAAGAACACACCCAAATTTTGGGGTGATGGCCCACAAGTCCATACTGACAAAACATCAAGGCAAGATTCAGCACATTTCCCCTGATGGACTGGAAAAGCGGGAtagaatagaaaaaataaatccctcttggtgagcaaaaaaaaaaaaggtaagttGAAGTTAAAGTGCATAAAAGCTTAAAATCAAaaaggtggtggggggggggggggcaaaaatTAAGAAACTTGCAGCACACACAGCTTAACAAtggggagagcagcggtcaggATTTTCAGGTCAACTGTCTCTCCAACTTTGTTCTACGATGGCAGACACACGCTTCTCATATTCCCGCTTGTTTTCCTGGTACAGCTGAGCTGCCTGACTGTTGGCTGGACTGTTGGGGTTTGGTTCATCAAGCAGggaCTGGATAGATGTAAGAATAGAGGACACATCATAAGTGGGACTCCAACGATTCTGTAGGATGTCCAAACATATACTGCCATCTGCATAGactgtggaaaaaaacataattatacacTACACACAAATATCAACACTTTAATGGGCCAGTAGAAGAGACAATATTCCTACCATTTGGATGAAACATCTTTGACACAAATCGTACTGTGGGGGGTTTGTTGGGGTATTCTTCTGTGAACTCTACAATGAGTTTAAATGTACCTGGGACAAAGacgagacacacaaaaaaacatatttgtgaGCCAGTGAGGAATGTTCCAAGGCAGAAAAGTGTGCTGGAGCAGTGACCTCTAACATTGAACACTCCCTCTATCAACATGAAGTTGTATATTACAGTTTTATCAACTatagaaaggggggggggggtaccgAACCCTGTACTTTTACCAGTACTGACTGAATGACGTCGGAACTACTGAGTATTGGGTCACgtaaaatcaaacggtgccaaattttGGTACCTGAGAGTAAGCGcgagcttatctgtcctctctgcatattgacagagagcagaggtccgacacacacacaggggcgcAGAGGTGCGGACAGAGCAAACAatgtcggctctgcagttttgttgaagtcacagtgcaGTAGGAGTTAGATTTTTAAGTGGCACGTGGCAGCTGGAAGTGGCATGTCCTGGCATGTGCCACTGGAAATGGCATGTTCTTCACCGTAAAATATAACGTTAAAATCTTCAAAGGGGAAAGAACAAGAACATTTGAGCTTAACACAACATACTTTTGCAACTTACTTACTTGATAATAACATTAGATATAACAATGTGTTTGATATTATTTTGGTTTGGTTGTGGTAAAAGAGATGTGAGATGCTTACCGTCCTCAAAGGGAGTTCCTTCAGGGCTGTGAGTTTAGAGAAAAAAGGGATTTCATCATTCCTTTTGCACTTTACACAAATCTATAAAATCTGTAGTTGTGGGGGAAATCTTGCCATTAATATTATGGCTGTGCATCAATG
>TU168970
atttttttttatttacaagtgctgaaaaaaatgacatgggGGACAACCAGTGCAAAATCTGTACATAAATTCAGTTGCAGGTTTCTTATATACACGAGTACTTAACAGGAACGTGAATACACTCTTTCTGTCATGCATGTAACAGAGTTCACAACACAGCAAATGACACAATGTAAAGATGTCTGATTTAGTTGTAGTCCATGATGCTCAGGCTGCTCATTCTCCCAGGGAAAGGTACATAGGACGATCACATTGGAGCCCACAAACTGccttgtgaaaacaaaatggcaGAACAGATGAGGAGCACAACAGAGGAGGACCCATGACTTAATTCACACACCCTCCAGGACATTTAACATAATTAGTCATGGGGAGTTATTACAGCAAGTAAGAACACACCCAAATTTTGGGGTGATGGCCCACAAGTCCATACTGACAAAACATCAAGGCAAGATTCAGCACATTTCCCCTGATGGACTGGAAAAGCGGGAtagaatagaaaaaataaatccctcttggtgagcaaaaaaaaaaaaggtaagttGAAGTTAAAGTGCATAAAAGCTTAAAATCAAaaaggtggtggggggggggggggcaaaaatTAAGAAACTTGCAGCACACACAGCTTAACAAtggggagagcagcggtcaggATTTTCAGGTCAACTGTCTCTCCAACTTTGTTCTACGATGGCAGACACACGCTTCTCATATTCCCGCTTGTTTTCCTGGTACAGCTGAGCTGCCTGACTGTTGGCTGGACTGTTGGGGTTTGGTTCATCAAGCAGggactggggggggggagaagatACAACACTCAAGGTGAGGTTTTAGTGGAAAATAACCAACCTGCATCAACCCCCATTCATCTACTTATAGCCAggacacaccagccagacgGCTGGCCGtcaacagaaaagccagtcgaaatgatcagtctccccgtgttggtccaaaaagtgccacagaacacgccaaagagacgagacgtagtacatctccataacagcaggcggcgctaatctgtattgttgcccaaaaaatttaAACCAGCAGCCGATTGGACGAACGCggcacatgggtttgttttctccggaaattcaaagccagactgtcatggcggccgttcagaatacgatctcatattgtactaaaatagttcactgaaacgtgtttctgaaaacattttaagcgagaaataggccatgcagttgtcttcatttcagctcaacaaaggtcagtttaaaagattttcatcagattttgagagactgtagtca

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168969 True 1835 lncRNA 0.42 2 20492178 20496215
TU168970 False 1283 TUCP 0.44 2 20492178 20521274

Neighbor

gene id symbol gene type direction distance location
ing1 ing1 coding upstream 1669 20485226 ~ 20490509 (+)
naxd naxd,LOC102782328 coding upstream 7117 20478711 ~ 20485061 (+)
col4a2 col4a2,LOC107557913 coding upstream 20654 20389518 ~ 20471524 (+)
tnfsf13b NA coding upstream 343128 20145083 ~ 20149050 (+)
abhd13 abhd13 coding upstream 349679 20137304 ~ 20142499 (+)
sik1 LOC103352856,LOC102193135,LOC102291704,LOC101480385 coding downstream 23103 20544377 ~ 20554354 (+)
gabpa gabpa coding downstream 119938 20641212 ~ 20649166 (+)
piga piga coding downstream 177957 20699231 ~ 20706004 (+)
asb11 LOC104950685,LOC102779537,LOC102313943 coding downstream 185967 20707241 ~ 20710700 (+)
xk xk coding downstream 203586 20724860 ~ 20734285 (+)
G125626 NA non-coding upstream 19 20491661 ~ 20492159 (+)
G125577 NA non-coding upstream 161519 20330387 ~ 20330659 (+)
G125547 NA non-coding upstream 223050 20228728 ~ 20269128 (+)
G125504 NA non-coding upstream 464197 20024263 ~ 20027981 (+)
G125501 NA non-coding upstream 475924 20016021 ~ 20016254 (+)
G125662 NA non-coding downstream 72766 20594040 ~ 20631194 (+)
G125668 NA non-coding downstream 82417 20603691 ~ 20611664 (+)
G125675 LOC106940919,LOC102232862,LOC103459816 non-coding downstream 127999 20649273 ~ 20651869 (+)
LOC120570651 NA non-coding downstream 146406 20667680 ~ 20679076 (+)
G125702 NA non-coding downstream 165423 20686697 ~ 20687047 (+)
myo16 myo16,LOC103372229 other upstream 226588 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 498854 19968360 ~ 19993324 (+)
igsf3 LOC103352919,LOC104967650 other upstream 1032904 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 1401393 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 1664631 18818753 ~ 18827547 (+)
mpc2b mpc2 other downstream 331815 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 338878 20860152 ~ 20865442 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 1098074 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 1133852 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 2209649 22730923 ~ 22738653 (+)

Expression


Co-expression Network