G125825


Basic Information

Item Value
gene id G125825
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20958707 ~ 20959962 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169227
CGAACCAATCTGGTGGTAGCTGGGTAATGTTTGTTAatacacactgagggtaaatcCTGTGCACACTGTACATGCTCAGGACTCTGTATGTTTTGTCTGTCTTGAGCGCTGTTGCTAGGATGTTTCCCctccactctttctctctccctctctctcaaggACTGTGGTGAAAAATGCTGATCCTGCCTCTCACCGTGTCTCTGTATCTTCCTCATCGCCTGTACACTGTATAGTCCCAGGACATTTTCCCTGTTGTCTCCAGGAATACACATCCTGCGGTTGCTAAAACTCACTGCtgtgtccctcctcctcctcttcctccctttccccctcctctgctctctccttTGACATTGTCTCTTCACTACAGACTCTGATCAGCTGTGACACTATGCATCATGGTCCTTCACTCTGCATGGACTGTGTCCCTCCGGCTCAGACCTCTGGCCGACGGGCTTCAGTGACACTTTGTTTAATGCTTTACTCCATGTGAGGTTGTAGGACCTCACAAGCTCTATCCCAAAGCAAAAATCCAAATATTTAACTTTTGACAAATGCAGATACCAAAGATATCTCTCTGtcctgtgtctttctctgtgtttctctccctTCCACCCTGCAGCATGTGTATTAAGAGACAAACCCAGCACTGGCTTTATTCCTAGCCTCAGTAATTCCAAAGCTTAGATGTATATTTTGGTATATTTCTGAGAAAAACTTTGCGTCTGTTTCTCGTTTGTTTGTTGTAATCTTTTTTCTGTCACAGCATGGAACTTATTGCAGAACTGTCTTACTCTTGGTAGGTTAAAGATATagtatttttgtatgtttttgggtgtgttgtgtgtgtgtgtgattatcaGTTCACAGCCCAAGTGACAATGGCTTTCAACAAGAGGAAAAacgagaaaaaagaagaaaaaaaccgcCAACCATGTACATATTACTTAGTGTATCTCAAAACTGCATTCTGTAAGACATTTACTACTCATTTTGGAAAGCTTGGGCTCATCTAAAGGAATGTGTCCCCGAtgtatttccctttttcttattttgcaGCCTGATAATACTTGTCTTTCCAGGACTCTAATGTAAAAAGCCCTGATTTCCATCATGGACAACACTGAGGGACACTGCTCCGATCTGACTAcaaggacaaaaacaaaaaaaaactgcctccAGTCATGGCGGTGTAGAACTGAAAGGTTGTGTAGGAGTTTTAAGTATGTGAATCAGGATACATAGTAGATTTTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169227 True 1256 lncRNA 0.43 1 20958707 20959962

Neighbor

gene id symbol gene type direction distance location
pou2f1b pou2f1 coding upstream 5137 20937568 ~ 20953570 (+)
nxpe3 nxpe3 coding upstream 73445 20875392 ~ 20885262 (+)
cep97 cep97 coding upstream 87373 20865935 ~ 20871334 (+)
gpr161a gpr161 coding upstream 135546 20813487 ~ 20823161 (+)
otc otc coding upstream 145326 20809318 ~ 20813381 (+)
lamp1b LOC104951941 coding downstream 11334 20971296 ~ 20976876 (+)
tfdp1a tfdp1 coding downstream 36551 20996513 ~ 21007034 (+)
LOC120569739 LOC103352901,LOC102791869,LOC102207044,LOC101487838,LOC100703644 coding downstream 48715 21008677 ~ 21013333 (+)
jam2b LOC108232408 coding downstream 65280 21025242 ~ 21034814 (+)
LOC120569870 st6gal2 coding downstream 112216 21072178 ~ 21124442 (+)
G125826 NA non-coding upstream 668 20953737 ~ 20958039 (+)
LOC120570516 NA non-coding upstream 47349 20903994 ~ 20911358 (+)
G125749 NA non-coding upstream 122953 20832494 ~ 20835754 (+)
G125738 NA non-coding upstream 133162 20795045 ~ 20825545 (+)
G125718 NA non-coding upstream 245513 20712406 ~ 20713194 (+)
G125892 NA non-coding downstream 231070 21191032 ~ 21191666 (+)
G125903 NA non-coding downstream 247292 21207254 ~ 21207454 (+)
G125904 NA non-coding downstream 248997 21208959 ~ 21209742 (+)
G125915 NA non-coding downstream 315481 21275443 ~ 21275840 (+)
G125957 NA non-coding downstream 447551 21407513 ~ 21409113 (+)
G125757 rpl24 other upstream 93265 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 99791 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 437433 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 693117 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 965383 19968360 ~ 19993324 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 659386 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 695164 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 1770961 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 1847231 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 2018640 22978602 ~ 23100083 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G51569 NA non-coding CI01000009 null 3287328 ~ 3290810 (+)
grasscarp (Ctenopharyngodon idella) G204402 NA non-coding CI01000048 null 270974 ~ 271195 (+)
rainbow trout (Oncorhynchus mykiss) G1773936 NA non-coding NC_048586.1 CM023240.2 8820854 ~ 8826155 (-)
bowfin (Amia calva) G70054 NA non-coding CM030128.1 CM030128.1 13694815 ~ 13696871 (+)