G125994 (txndc9)


Basic Information

Item Value
gene id G125994
gene name txndc9
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21473163 ~ 21476750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169446
attcacattttttattaagTCTGCAATAATCAAGTCAAACTCTTGCTACAAGGAAATCGGATGTAAAAATGAATTCTGATGCTAAAAGATGATCTTGGCAATCATGCATCATGGTTTCTGTTCAAACATCAGACTCGCAGGTTAGGAAACACACGAAATAAACAGAACTACGCAAATGAGCACAGCCTTTAGTGCACGCATgtaattttttgttgttgttgaaatgtAATTCATTAAATAAGGGTAAAACAAAAAgcgcttttataaaaacaattgATTTGAGATATggtatattaaaataaaatctgttatGAATGGGAAAGTCACAGAGAGAAGGGGAGAAGAAAAATGAGAGCGGGCTGTCTGCTAAACTTTATTTTCCTTAAAGGAGGTAGCCCTGAGAGAAACAACCAGATGACTGTCGGTGCTTTTCAGTCatcttcagaatcagaatcagagtCGTAACCCCCCCCTCTGATGGTTTTCTTCTCCACCTTTGTGAACTTTGTCCCCGACCTCTTTGTCATTGTAGGAGGCTCCATCAGGTTACCGCTGTAGTTAATAACATCTGCACAGCCCAGTCTCCATTCAAGCATCTCTGTGGAAAACTCGTCTGTGTTTCCCAGGTCAGAGAATCCAACCACATAGTCCTTTGTTTTCCCGTCTAATAGCAAGGCCATTGTAGGAATAACCTTGATCCGCAGCCTCTCTGTCAGAAACGGGGCCTTTTCCACATTCAGTTTGATGAATTTGGTCTCAACATGCTTCTTTGCCAAGATGGCCAAGTGTTTGTCAAGGATCTTACATCTTTATGTAGAATTTTTGTAGAAGTGGCAGACAACGTTCTTGCTATCTTTGACCTCGCTGAAAAAGTCTTTCTCACTTGAGATTTCTCTGTACTCTCCATGGCCTTTAGACAACCACTCCTGCTTCTGTTTCTGGGCTTTTTTAAGTGCCTCTAATCGCTTCTCCTTCAGTCTTTCCAAATCATCTTCATCCATTTCATTCAGTTTGCTCAACTGTGCATCCACCTTCTCCTCAACCAGCTTGGCTGAATGCTCCAAGACCTTTGTTATGATGTCAACTGATTGGTTGGCCATGGTTGCCTGCTCAGTGAAACTCTTTGAATCTGGGGCAAAAGAACATGACATAAACTGAGACATGACAGCA
>TU169447
attcacattttttattaagTCTGCAATAATCAAGTCAAACTCTTGCTACAAGGAAATCGGATGTAAAAATGAATTCTGATGCTAAAAGATGATCTTGGCAATCATGCATCATGGTTTCTGTTCAAACATCAGACTCGCAGGTTAGGAAACACACGAAATAAACAGAACTACGCAAATGAGCACAGCCTTTAGTGCACGCATgtaattttttgttgttgttgaaatgtAATTCATTAAATAAGGGTAAAACAAAAAgcgcttttataaaaacaattgATTTGAGATATggtatattaaaataaaatctgttatGAATGGGAAAGTCACAGAGAGAAGGGGAGAAGAAAAATGAGAGCGGGCTGTCTGCTAAACTTTATTTTCCTTAAAGGAGGTAGCCCTGAGAGAAACAACCAGATGACTGTCGGTGCTTTTCAGTCatcttcagaatcagaatcagagtCGTAACCCCCCCCTCTGATGGTTTTCTTCTCCACCTTTGTGAACTTTGTCCCCGACCTCTTTGTCATTGTAGGAGGCTCCATCAGGTTACCGCTGTAGTTAATAACATCTGCACAGCCCAGTCTCCATTCAAGCATCTCTGTGGAAAACTCGTCTGTGTTTCCCAGGTCAGAGAATCCAACCACATAGTCCTTTGTTTTCCCGTCTAATAGCAAGGCCATTGTAGGAATAACCTTGATCCGCAGCCTCTCTGTCAGAAACGGGGCCTTTTCCACATTCAGTTTGATGAATTTGGTCTCAACATGCTTCTTTGCCAAGATGGCCAAGTGTTTGTCAAGGATCTTACATCTGAAGGTAGAATTTTTGTAGAAGTGGCAGACAACGTTCTTGCTATCTTTGACCTCGCTGAAAAAGTCTTTCTCACTTGAGATTTCTCTGTACTCTCCATGGCCTTTAGACAACCACTCCTGCTTCTGTTTCTGGGCTTTTTTAAGTGCCTCTAATCGCTTCTCCTTCAGTCTTTCCAAATCATCTTCATCCATTTCATTCAGTTTGCTCAACTGTGCATCCACCTTCTCCTCAACCAGCTTGGCTGAATGCTCCAAGACCTTTGTTATGATGTCAACTGATTGGTTGGCCATGGTTGCCTGCTCAGTGAAACTCTTTGAATCGACACTTGTGTTTGTGCGCGATATCGGTTGC

Function

symbol description
txndc9 Orthologous to human TXNDC9 (thioredoxin domain containing 9).

NR:

description
PREDICTED: thioredoxin domain-containing protein 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169446 True 1170 lncRNA 0.41 4 21473163 21475693
TU169447 False 1161 lncRNA 0.41 5 21473163 21476750

Neighbor

gene id symbol gene type direction distance location
mrpl30 mrpl30,LOC102785580 coding upstream 1495 21468365 ~ 21471668 (+)
si:dkey-4e7.3 LOC103368133 coding upstream 66262 21398530 ~ 21406901 (+)
inpp4aa inpp4a,LOC106581879 coding upstream 86607 21369820 ~ 21386556 (+)
mfsd9 mfsd9 coding upstream 120506 21345532 ~ 21352657 (+)
LOC120570592 fhl2,LOC104956538 coding upstream 198535 21269253 ~ 21274628 (+)
arhgef7a arhgef7,LOC103372297,LOC102301399,LOC106582025 coding downstream 41752 21518502 ~ 21550035 (+)
mcf2lb LOC100707473,LOC101480000,LOC102199374,LOC103372300 coding downstream 215471 21692221 ~ 21742235 (+)
phf11 NA coding downstream 266998 21743748 ~ 21755526 (+)
trim13 trim13 coding downstream 316524 21793274 ~ 21809912 (+)
rnaseh2b rnaseh2b coding downstream 371901 21848651 ~ 21854501 (+)
G125992 mitd1,LOC102785871 non-coding upstream 5031 21465910 ~ 21468132 (+)
G125958 NA non-coding upstream 63198 21409192 ~ 21409965 (+)
G125957 NA non-coding upstream 64050 21407513 ~ 21409113 (+)
G125915 NA non-coding upstream 197323 21275443 ~ 21275840 (+)
G125904 NA non-coding upstream 263421 21208959 ~ 21209742 (+)
G126000 NA non-coding downstream 3179 21479929 ~ 21482025 (+)
G126160 LOC103371890 non-coding downstream 874277 22351027 ~ 22352358 (+)
G126162 LOC103371890 non-coding downstream 879344 22356094 ~ 22357669 (+)
G126169 NA non-coding downstream 908779 22385529 ~ 22385754 (+)
G126175 NA non-coding downstream 968578 22445328 ~ 22446121 (+)
G125757 rpl24 other upstream 607721 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 614247 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 951889 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 1207573 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 1479839 19968360 ~ 19993324 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 142598 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 178376 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 1254173 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 1330443 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 1501852 22978602 ~ 23100083 (+)

Expression


Co-expression Network