G126160 (LOC103371890)


Basic Information

Item Value
gene id G126160
gene name LOC103371890
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22351027 ~ 22352358 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169684
taaatataaaaacaagatTTATTGCTGAAAACATACATGGTGCATGAAAAACAACCGTAGTCATGACAGATGTGGAAGAAACCTAACAATTTCTCTCCAATGATTTATAGCTTTATGTACACTTTGTTGTGAGtttgaaaacaaaacataaattatGTCATTTCCACATTGAAGCTcagtttatattttttatatatattttattcttttataaaATATGTGACAAGTCTGCACAAgcattaaaaatacattaatcttTCCAAGTGACCCCATAGAAACACTCAAGctttgtttttcttataataaatcaacaatttGGCTAAAAGCTGTTTTATCTTGTACCTGAAATGTATCAAACTATATGATCCCTggtatacatactgtatttcacaccatatacatatataaacaaaGGTTTAATACTGTGCAAACTGCAACTGCTAATAATCCCTTAGGGCTAGCAGAAGGTCAattctgcatgtttgtgtgtacttGTATTTTACATAGTCCAAATGTACACTGAAAGTATGCTTGGCACTTTTCTACAAATGACACAATTTGTGTGTGAAATGCAAGTATTGTGAATGAGTTTTACTTTCTCATCTCAAAAGCCCGAGCACGCACAGAATATTCAATAGCAATCCCCTTTGATAAATAATATCATACAAGTTATTACACTTTGGGAGCCAGCTTCCCAACATTTTCTCTGTGATTACTGCATATTCAACACTCAAACCCCTGCATTCCTTCGCTGAATGCATTTTTGATAAATACAGAAATTAAGACCAATGGTACAAAGGCACTCAATAGAATTTTGGGACATCTAATATTCCTACATGTTCATACCTGGGAGAATAGGCTGAGTTCAAAGAGACAGACCCATGGTGTCTACTATGGTACAGTGTCCATGGTAACATGAAAGAAAGGCCAACCTCCCTTCAGGCCTAGTGagacctcttcttcttcctcccgACCAAGAAAGTCATCCTTCCTGGACAGCCCTGTGGGGTCTTACCACTTCCCAGGGATGGGCGTGCCACACTCGTACCAGCCTACGTAAGTAACATGTGACTTCCCTCCAATCTCTCCAAAGTTGACAGGTTCCTGTCTCATCGCTCTATAAAATCCTGGCCTGCTCGGTAGCTGGTCAGCAAACATCTGGGTGCCGGTCCGTCCATCCAGAAAGGAGTCTACAAACTGACAATGGTCCTCACCGTGCCCCGTCTGATCTCCAATGTTGTAAAAC

Function

NR:

description
PREDICTED: target of Nesh-SH3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169684 True 1246 lncRNA 0.39 2 22351027 22352358

Neighbor

gene id symbol gene type direction distance location
tfg tfg coding upstream 968 22332905 ~ 22350059 (+)
jagn1a LOC104964438,LOC103371888,LOC106923881,LOC103134718 coding upstream 18226 22330500 ~ 22332801 (+)
col8a1a col8a1 coding upstream 21395 22316100 ~ 22329632 (+)
tmem30c LOC104964416 coding upstream 78404 22268840 ~ 22272623 (+)
cmss1 cmss1 coding upstream 82579 22227032 ~ 22268448 (+)
mycbp2 mycbp2,LOC102794783 coding downstream 315948 22668306 ~ 22730423 (+)
zgc:162944 LOC104958623,LOC102208337,LOC101482774 coding downstream 392102 22744460 ~ 22747518 (+)
kctd12.1 kctd12 coding downstream 400747 22753105 ~ 22754604 (+)
commd6 commd6,LOC102792157 coding downstream 498583 22850941 ~ 22855543 (+)
tbc1d4 tbc1d4 coding downstream 504592 22856950 ~ 22887388 (+)
G126000 NA non-coding upstream 869002 21479929 ~ 21482025 (+)
G125994 txndc9 non-coding upstream 874277 21473163 ~ 21476750 (+)
G125992 mitd1,LOC102785871 non-coding upstream 882895 21465910 ~ 21468132 (+)
G125958 NA non-coding upstream 941062 21409192 ~ 21409965 (+)
G125957 NA non-coding upstream 941914 21407513 ~ 21409113 (+)
G126162 LOC103371890 non-coding downstream 3736 22356094 ~ 22357669 (+)
G126169 NA non-coding downstream 33171 22385529 ~ 22385754 (+)
G126175 NA non-coding downstream 92970 22445328 ~ 22446121 (+)
G126246 NA non-coding downstream 182773 22535131 ~ 22537513 (+)
G126267 NA non-coding downstream 263953 22616311 ~ 22620608 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 659223 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 716270 21619348 ~ 21634757 (+)
G125757 rpl24 other upstream 1485585 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 1492111 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 1829753 20492178 ~ 20521274 (+)
fbxl3a fbxl3 other downstream 378565 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 454835 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 626244 22978602 ~ 23100083 (+)
cwc22 cwc22 other downstream 1831591 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 1924799 24277157 ~ 24298218 (+)

Expression


Co-expression Network