fbxl3a (fbxl3)


Basic Information

Item Value
gene id fbxl3a
gene name fbxl3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22730923 ~ 22738653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169856
tttttttattttttttttgATATTTCATGTTAACCAAACAGTGCTGTAGATTAAAACTGAGACACGTGTTGCAGTACGTATGTTGCAAACGTTTCTTAGTTTTATTGGATTGAACTAAGTCTATTGATTAGTATTGGTCTCTCTTATCACTGATGTTAGATACCTGTGCTGATTGTCTGTGCTCTTGTGCATTAGCATCTCCATGGTACAGTAACATAtcctgatttctttttttatttctaatgaTTTGTGCAGTACATTAAAGGGTTGCCGTGTCAGCAGCTTTAAAGTGACGGTTGTGTCTCGTAACCATTTTCCTGTTGTTTTTATTGGCTTTCATTGGGAATTTCAGTAGAGTAAAacatgtttcatttaaatacaGATAAAATACAATCATTAAGATGTCAGTAATTGTTTTAACCTAGTGTGTCCTCCGAGTCCTCCAGTAAGTTTTATTAGGGGTATACTGGTGTTGACAATGCTGTCCTTCTAGTTTTGCTTCTGTTTGGCAAATGCTTTGTCTACTTTGCTTAACTGGTCACCTGTCTTGAAATTAAAATTGTTTTGGACATGTGATCTTATACCAGTAATAAAGATTTATGAATGTACTCT
>XM_039817900.1
ATCTTTACCAACAGCCATTTCGCATTGCATTTCCCATGGTGCACCGCTGCtgtcacaacaacaacatttcGCCATTTCAGGTTCAGGGGGGCCTAAACTCCCGCGAAGGATTTAGGATGAAGCGGATCAAAGGAGTAGAGGAGGACAGCAACAGCTCCTCCAGTAAGAGCCCACCGGAGGCTTGCAAGAAGGTTCGGAAGCAGACGAGCGATGAGTTAAAGGCAGTGGTGGCCAGTGAGTCAACAGAGAGTGACTGGGCACGACTGCCTCAGGAGCTCCTGCTACACATCTTTCAGTACCTTCCACTGCTGGATCGGGCTTATGCCTCTCAGGTGTGTCGCACGTGGAACCAGGCCTTCCACATGCCCGAGCTGTGGAGATGCTTTGAGTTTGAGCTTAACCAGCCAGCAAGCTCTTACCTAAAAGCCACACATCCAGACCTCATCAAGCAGATCATAAAGAGGCACTCCAACCACCTGCAGTATGTCAGCTTCAAGGTTGACAGTAGTACAGAATCTGCAGAAGCAGCATGTGACATCCTTTCACAGTTGGTGAATTGCTCACTGAAGACCTTGGGGCTCATCTCTACAGCCAGGCCCAGTTTCATGGAGGTTCCCAAGTCTCATTTCATCTCAGCTCTGACTGTGGTGTTTGTCAACTCCAAATCATTGTCTTCGCTGAAGATTGACGACACGCCGGTGGACGATCCGTCTCTGAAGGTGCTGGTGGCCAACAACAGCGACACCCTGAAACTGCTGAAGATGAGCAGCTGCCCTCACGTCTCCCCAGCAGGGATCCTGTGTGTGGCAGACCAGTGTCACGGCCTGAGAGAGCTAGCACTAAACTACCATCTATTGAGTGATGAACTCCTGCTGGCCCTCTCCTCTGAGAAACACGTCCACCTGGAACACTTGCGGATCGACGTGGTGAGTGAGAACCCTGGCCAGCATTTCCACACCATCAAGAAGAGCAGCTGGGACGCCATGGTGCGACACTCGCCCAAATTCAACCTGGTCATGTACTTCTTCCTTTATGAGGACGAGTTTGGCCCTTTCTTCAATGAGGAGGTCCCGGTCACGCACCTCTACTTTGGTCGCTCAGTCAGTAAGGAGGTCTTGGGCCGCGTTGGCCTCCACTGCCCTCGTCTGGTGGAGCTGGTGGTGTGCGCCAACGGCCTCCGTCCTCTGGACGAGGAGCTGATCCGCATCGCCAAGCACTGCACCCAGCTGTCGGCCATCGGCCTGGGCGAGTGCGAGGTTTCCTGCAGCGCATTTGTGGAGTTTGTCAAGATGTGTGGCCGGAGGCTTTCCCAGCTGTCCATCATGGAGGAGGTGCTGATTCCAGATCACAAATACTCCCTGGATGAGATCCACTGGGAGGTTTCTAAGCACCTGGGCCGGGTCTGGTTCCCAGACATGATGCCGACCTGGTAGAGTGAAGCCAAAGAGGCACACATAATTTAAGTACGTCTAGTTTGTGGTGTGGAATATTCATGGCCTCCATGTTTGCAAAGAAAAGCCTTTTTAAATGCTCGGCTGTAGTGAAATGTTTGCTGCTAACATGGAGAGCATGAACCTGCTGAACTCCTGTGTGGCGTCCAGGACAGGGATGTAATGTGGCGCCTGACTGCTACACAAAGTTATCATGTCATGCAAACACCACAACAATCTCTGCCTGATAGCTTCAAAGTAGACTGTAGAATCCTACTTTGCCTAGTCTGGAGACAGAACAAGCCTGCTTCTTCACATATGAAACACTCAGCACAGGTGGAAATATTTTACTAAAAAAACCCAATGTTTTTAAAACTGCAAattgagttgtgtgtgtgtgtaagtgtgtgtgtgtaacatggGGTTATTTGGGACAATTAGGTGCACAATTGCATGTTGTAACACTATCACTTGGCCTACTTAAGTCCGGTCTGAAAGAGCAGCTCTGCACACTAAAAGAATATGGCATCGGAGGTTTCCAAATGGCTGCGATGTTATTTGTACATAGTATGTGACAGAAGGTTTTCTGTAAGGGGTAGTCGAGGTGGAGGACTCACTTAATTATGCAGAAGAGTCATTGTGTCCTACACCTCCATTTTAAACTAATTTATTGATAAAGAGCAGCGATAGTGTTGACAACATCTTGCTTTTCCTTCTCGCCCGAGCTCAATCAAAAAAGCAAACACGATTGTTGAAAATGTTAAGTTGGCCAGGAGAGAAAGTGAAATGTGTATGGACTCTAGGTCTCTATCTTTGTGACGTGAAGGTGTGCAGTATCTATTGAtacttgtcattttattttctccagATTATGCAGATTCTCTTTATTTTCTGCATCCTGTATCAATTGGCTTGACAAATTGATTTCTCGGTTTCGTTTTAAAGAAGGTTTCTGTACAGTCCTAGATTTCCTAAGCACCTACCAAATGATAGCTAGGACAAAACAAGCCATTTTGCCCTGATGAATGCAAGGAAACCATCTTTATAATGTTCCAATTTGAGTTTATTTATTGGTTGGACCCAGATTCTAATGATTATGAACACTGTACTGGGGTTCTGTTGAATCAGATACAGAGGACAGTATATGAAGTAATAAAGCTATCATtgctaataaaaaaacaacaaccgagAACTAGTTCTATGTAAATACAGATTGTGTGTCTCAGGTGCATTTAATGAATATATTTCTATTAATAGGTTTCATTTGTATCTTCTGCTATTAGCCTGTTCAAGCTCTAAACGTTAACATGTTGTGAATATCTGCCCTTCTATTAGCCCACGTTTGCTCTGTATCAGGTTACCACATCGTACGTACAGGAGAGGAAGCAGTATTCATCTTGTATATTCATTACAAACACTGTCTCTGCAGATATCACTAGTGCTCCTGTCCAAAACATCCATTAATTTCAGTCGAAAGAGATTTGGCAAGTTGGATGAgtgaaacaattttttttttcctttaagaAGGAAGTCGAATGCACCTGTATATAAAAcgctgtgtgttttattatgaatAGAAATGTAcccatttcttttatttcaccCTCTGTTGGGGTTTGGAGTTTCCTTAACCAACGGCTAGtgtctttttataaaaaatcaGAGTGCGAGTTATCCCTTACTAGATGGATCTTTTTCATACTGTAGAACATACACTAGAGGAGATAAGCTGTGTAATCTATTGATATGGATACTGCTTTTGTAATTAATTTGTGATTTTTCCCTTATATAAAAGAAACAATCATTATAACCAGCAAGCCAGCCAGCAGCAAGATTAGTTATTTTTTGGGCGCGGGGGGGTTTGACACTTCCACCTCTGTCACTATGATTTTGTTGCATGTCGGTGGTCCAAACGTTTTGAGTCCACTGCCGCAAGCTTTTCATCATTCATGAACACAGAGGAGAGATTTAAACAAGTAATTTATTCCAAAACAAAACCAgcaaaactgaaagttacacTTGAGTTAGTAAATCAACCCCTGTTGGAAAAAGGTTGCTCTACACCTGCTTGAATTTCAGGAAGAGAAAGTACTTTCTTTGCTTTGCTTTCTcgccacagtcaccagatctgaATCCTACTCATCTTCAtgatgaaaaaaaggaaaatgtgaaAGTTAGTTTATCATCAGAATACACTTGCTTTTACTTGTAGATTATAAAAATCTGCAGAAATGGGTAGGTCACTCAGATAAGAAATTGCTAGCAAAGTCACAATCAAACCATTAAAAATGTTAATAGatcattattgtgtgtgtgtatgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatttatatttgacaAAAGATGTTTTCAAAAAGAGTTATCCGTAGTGGACAAACATTTGGACAACGCTGCATGATAATAGGATCTGTAGATAACccagatattatttttttttctgccagaCTTCATTCCTTTTTTTCATGCCCTATTAGATATTTCATGTTAACCAAACAGTGCTGTAGATTAAAACTGAGACACGTGTTGCAGTACGTATGTTGCAAACGTTTCTTAGTTTTATTGGATTGAACTAAGTCTATTGATTAGTATTGGTCTCTCTTATCACTGATGTTAGATACCTGTGCTGATTGTCTGTGCTCTTGTGCATTAGCATCTCCATGGTACAGTAACATAtcctgatttctttttttatttctaatgaTTTGTGCAGTACATTAAAGGGTTGCCGTGTCAGCAGCTTTAAAGTGACGGTTGTGTCTCGTAACCATTTTCCTGTTGTTTTTATTGGCTTTCATTGGGAATTTCAGTAGAGTAAAacatgtttcatttaaatacaGATAAAATACAATCATTAAGATGTCAGTAATTGTTTTAACCTAGTGTGTCCTCCGAGTCCTCCAGTAAGTTTTATTAGGGGTATACTGGTGTTGACAATGCTGTCCTTCTAGTTTTGCTTCTGTTTGGCAAATGCTTTGTCTACTTTGCTTAACTGGTCACCTGTCTTGAAATTAAAATTGTTTTGGACATGTGATCTTATACCAGTAATAAAGATTTATGAATGTA
>XM_039817901.1
TGCACCGCTGCtgtcacaacaacaacatttcGCCATTTCAGGTTCAGGGGGGCCTAAACTCCCGCGAAGGATTTAGGTAAAACGAGCTTCCAGCGTCCGTCTTTTCATTGACAACATATCTTACCTCCTCTCTATCGTCAAACGGCTTCGTTATTGTGGTCCGATGCATGTTATTTGGTTGGTGCGAATGAGCTTTTCCAGCGTGGGCCCGGGCTGAAGTGTCAAGTGTCTGTTGTCGGATTTTcctgctaacagctagctagctgggtgTAAACAAAAAGGATGAAGCGGATCAAAGGAGTAGAGGAGGACAGCAACAGCTCCTCCAGTAAGAGCCCACCGGAGGCTTGCAAGAAGGTTCGGAAGCAGACGAGCGATGAGTTAAAGGCAGTGGTGGCCAGTGAGTCAACAGAGAGTGACTGGGCACGACTGCCTCAGGAGCTCCTGCTACACATCTTTCAGTACCTTCCACTGCTGGATCGGGCTTATGCCTCTCAGGTGTGTCGCACGTGGAACCAGGCCTTCCACATGCCCGAGCTGTGGAGATGCTTTGAGTTTGAGCTTAACCAGCCAGCAAGCTCTTACCTAAAAGCCACACATCCAGACCTCATCAAGCAGATCATAAAGAGGCACTCCAACCACCTGCAGTATGTCAGCTTCAAGGTTGACAGTAGTACAGAATCTGCAGAAGCAGCATGTGACATCCTTTCACAGTTGGTGAATTGCTCACTGAAGACCTTGGGGCTCATCTCTACAGCCAGGCCCAGTTTCATGGAGGTTCCCAAGTCTCATTTCATCTCAGCTCTGACTGTGGTGTTTGTCAACTCCAAATCATTGTCTTCGCTGAAGATTGACGACACGCCGGTGGACGATCCGTCTCTGAAGGTGCTGGTGGCCAACAACAGCGACACCCTGAAACTGCTGAAGATGAGCAGCTGCCCTCACGTCTCCCCAGCAGGGATCCTGTGTGTGGCAGACCAGTGTCACGGCCTGAGAGAGCTAGCACTAAACTACCATCTATTGAGTGATGAACTCCTGCTGGCCCTCTCCTCTGAGAAACACGTCCACCTGGAACACTTGCGGATCGACGTGGTGAGTGAGAACCCTGGCCAGCATTTCCACACCATCAAGAAGAGCAGCTGGGACGCCATGGTGCGACACTCGCCCAAATTCAACCTGGTCATGTACTTCTTCCTTTATGAGGACGAGTTTGGCCCTTTCTTCAATGAGGAGGTCCCGGTCACGCACCTCTACTTTGGTCGCTCAGTCAGTAAGGAGGTCTTGGGCCGCGTTGGCCTCCACTGCCCTCGTCTGGTGGAGCTGGTGGTGTGCGCCAACGGCCTCCGTCCTCTGGACGAGGAGCTGATCCGCATCGCCAAGCACTGCACCCAGCTGTCGGCCATCGGCCTGGGCGAGTGCGAGGTTTCCTGCAGCGCATTTGTGGAGTTTGTCAAGATGTGTGGCCGGAGGCTTTCCCAGCTGTCCATCATGGAGGAGGTGCTGATTCCAGATCACAAATACTCCCTGGATGAGATCCACTGGGAGGTTTCTAAGCACCTGGGCCGGGTCTGGTTCCCAGACATGATGCCGACCTGGTAGAGTGAAGCCAAAGAGGCACACATAATTTAAGTACGTCTAGTTTGTGGTGTGGAATATTCATGGCCTCCATGTTTGCAAAGAAAAGCCTTTTTAAATGCTCGGCTGTAGTGAAATGTTTGCTGCTAACATGGAGAGCATGAACCTGCTGAACTCCTGTGTGGCGTCCAGGACAGGGATGTAATGTGGCGCCTGACTGCTACACAAAGTTATCATGTCATGCAAACACCACAACAATCTCTGCCTGATAGCTTCAAAGTAGACTGTAGAATCCTACTTTGCCTAGTCTGGAGACAGAACAAGCCTGCTTCTTCACATATGAAACACTCAGCACAGGTGGAAATATTTTACTAAAAAAACCCAATGTTTTTAAAACTGCAAattgagttgtgtgtgtgtgtaagtgtgtgtgtgtaacatggGGTTATTTGGGACAATTAGGTGCACAATTGCATGTTGTAACACTATCACTTGGCCTACTTAAGTCCGGTCTGAAAGAGCAGCTCTGCACACTAAAAGAATATGGCATCGGAGGTTTCCAAATGGCTGCGATGTTATTTGTACATAGTATGTGACAGAAGGTTTTCTGTAAGGGGTAGTCGAGGTGGAGGACTCACTTAATTATGCAGAAGAGTCATTGTGTCCTACACCTCCATTTTAAACTAATTTATTGATAAAGAGCAGCGATAGTGTTGACAACATCTTGCTTTTCCTTCTCGCCCGAGCTCAATCAAAAAAGCAAACACGATTGTTGAAAATGTTAAGTTGGCCAGGAGAGAAAGTGAAATGTGTATGGACTCTAGGTCTCTATCTTTGTGACGTGAAGGTGTGCAGTATCTATTGAtacttgtcattttattttctccagATTATGCAGATTCTCTTTATTTTCTGCATCCTGTATCAATTGGCTTGACAAATTGATTTCTCGGTTTCGTTTTAAAGAAGGTTTCTGTACAGTCCTAGATTTCCTAAGCACCTACCAAATGATAGCTAGGACAAAACAAGCCATTTTGCCCTGATGAATGCAAGGAAACCATCTTTATAATGTTCCAATTTGAGTTTATTTATTGGTTGGACCCAGATTCTAATGATTATGAACACTGTACTGGGGTTCTGTTGAATCAGATACAGAGGACAGTATATGAAGTAATAAAGCTATCATtgctaataaaaaaacaacaaccgagAACTAGTTCTATGTAAATACAGATTGTGTGTCTCAGGTGCATTTAATGAATATATTTCTATTAATAGGTTTCATTTGTATCTTCTGCTATTAGCCTGTTCAAGCTCTAAACGTTAACATGTTGTGAATATCTGCCCTTCTATTAGCCCACGTTTGCTCTGTATCAGGTTACCACATCGTACGTACAGGAGAGGAAGCAGTATTCATCTTGTATATTCATTACAAACACTGTCTCTGCAGATATCACTAGTGCTCCTGTCCAAAACATCCATTAATTTCAGTCGAAAGAGATTTGGCAAGTTGGATGAgtgaaacaattttttttttcctttaagaAGGAAGTCGAATGCACCTGTATATAAAAcgctgtgtgttttattatgaatAGAAATGTAcccatttcttttatttcaccCTCTGTTGGGGTTTGGAGTTTCCTTAACCAACGGCTAGtgtctttttataaaaaatcaGAGTGCGAGTTATCCCTTACTAGATGGATCTTTTTCATACTGTAGAACATACACTAGAGGAGATAAGCTGTGTAATCTATTGATATGGATACTGCTTTTGTAATTAATTTGTGATTTTTCCCTTATATAAAAGAAACAATCATTATAACCAGCAAGCCAGCCAGCAGCAAGATTAGTTATTTTTTGGGCGCGGGGGGGTTTGACACTTCCACCTCTGTCACTATGATTTTGTTGCATGTCGGTGGTCCAAACGTTTTGAGTCCACTGCCGCAAGCTTTTCATCATTCATGAACACAGAGGAGAGATTTAAACAAGTAATTTATTCCAAAACAAAACCAgcaaaactgaaagttacacTTGAGTTAGTAAATCAACCCCTGTTGGAAAAAGGTTGCTCTACACCTGCTTGAATTTCAGGAAGAGAAAGTACTTTCTTTGCTTTGCTTTCTcgccacagtcaccagatctgaATCCTACTCATCTTCAtgatgaaaaaaaggaaaatgtgaaAGTTAGTTTATCATCAGAATACACTTGCTTTTACTTGTAGATTATAAAAATCTGCAGAAATGGGTAGGTCACTCAGATAAGAAATTGCTAGCAAAGTCACAATCAAACCATTAAAAATGTTAATAGatcattattgtgtgtgtgtatgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatttatatttgacaAAAGATGTTTTCAAAAAGAGTTATCCGTAGTGGACAAACATTTGGACAACGCTGCATGATAATAGGATCTGTAGATAACccagatattatttttttttctgccagaCTTCATTCCTTTTTTTCATGCCCTATTAGATATTTCATGTTAACCAAACAGTGCTGTAGATTAAAACTGAGACACGTGTTGCAGTACGTATGTTGCAAACGTTTCTTAGTTTTATTGGATTGAACTAAGTCTATTGATTAGTATTGGTCTCTCTTATCACTGATGTTAGATACCTGTGCTGATTGTCTGTGCTCTTGTGCATTAGCATCTCCATGGTACAGTAACATAtcctgatttctttttttatttctaatgaTTTGTGCAGTACATTAAAGGGTTGCCGTGTCAGCAGCTTTAAAGTGACGGTTGTGTCTCGTAACCATTTTCCTGTTGTTTTTATTGGCTTTCATTGGGAATTTCAGTAGAGTAAAacatgtttcatttaaatacaGATAAAATACAATCATTAAGATGTCAGTAATTGTTTTAACCTAGTGTGTCCTCCGAGTCCTCCAGTAAGTTTTATTAGGGGTATACTGGTGTTGACAATGCTGTCCTTCTAGTTTTGCTTCTGTTTGGCAAATGCTTTGTCTACTTTGCTTAACTGGTCACCTGTCTTGAAATTAAAATTGTTTTGGACATGTGATCTTATACCAGTAATAAAGATTTATGAATGTA

Function

symbol description
fbxl3 Contributes to ubiquitin-protein transferase activity. Involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and regulation of circadian rhythm. Located in nuclear body. Part of SCF ubiquitin ligase complex.

NR:

description
F-box/LRR-repeat protein 3

GO: NA

KEGG:

id description
K10269 FBXL3; F-box and leucine-rich repeat protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU169856 False 612 lncRNA 0.34 2 22734060 22738653
XM_039817900.1 False 4553 mRNA 0.42 5 22730923 22738649
XM_039817901.1 True 4719 mRNA 0.42 5 22730962 22738649

Neighbor

gene id symbol gene type direction distance location
mycbp2 mycbp2,LOC102794783 coding upstream 500 22668306 ~ 22730423 (+)
tfg tfg coding upstream 380864 22332905 ~ 22350059 (+)
jagn1a LOC104964438,LOC103371888,LOC106923881,LOC103134718 coding upstream 398122 22330500 ~ 22332801 (+)
col8a1a col8a1 coding upstream 401291 22316100 ~ 22329632 (+)
tmem30c LOC104964416 coding upstream 458300 22268840 ~ 22272623 (+)
zgc:162944 LOC104958623,LOC102208337,LOC101482774 coding downstream 5807 22744460 ~ 22747518 (+)
kctd12.1 kctd12 coding downstream 14452 22753105 ~ 22754604 (+)
commd6 commd6,LOC102792157 coding downstream 112288 22850941 ~ 22855543 (+)
tbc1d4 tbc1d4 coding downstream 118297 22856950 ~ 22887388 (+)
klf12b klf12 coding downstream 175548 22914201 ~ 22960754 (+)
G126290 NA non-coding upstream 72031 22657517 ~ 22658892 (+)
G126280 LOC104958628,LOC108232414,LOC106098708 non-coding upstream 91161 22639470 ~ 22639762 (+)
G126267 NA non-coding upstream 110315 22616311 ~ 22620608 (+)
G126246 NA non-coding upstream 193410 22535131 ~ 22537513 (+)
G126175 NA non-coding upstream 284802 22445328 ~ 22446121 (+)
G126352 NA non-coding downstream 32057 22770710 ~ 22770920 (+)
G126358 NA non-coding downstream 59248 22797901 ~ 22798312 (+)
LOC120569671 NA non-coding downstream 227973 22966626 ~ 22969170 (+)
G126439 zic5,LOC102789084 non-coding downstream 494214 23232867 ~ 23236823 (+)
G126447 NA non-coding downstream 613924 23352577 ~ 23352820 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 1039119 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 1096166 21619348 ~ 21634757 (+)
G125757 rpl24 other upstream 1865481 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 1872007 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 2209649 20492178 ~ 20521274 (+)
G126363 lmo7 other downstream 68540 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 239949 22978602 ~ 23100083 (+)
cwc22 cwc22 other downstream 1445296 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 1538504 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 1633818 24372471 ~ 24394985 (+)

Expression


Co-expression Network