cwc22 (cwc22)


Basic Information

Item Value
gene id cwc22
gene name cwc22
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24183949 ~ 24199835 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU170433
AGGGCAGCCGCCGTAGCAGACGAGATGaaagagcagaagaagaagaggagcagcaggCGGAGGAGAGGAGACGAAAAACGGATGTTCAAGGCCGACAAAGAgacggagagagggagagagagagagacagcgggagggagagagagagagagcgagtgagggagagagagactgaggagaagagagagagggaaagggagCAAGAGAAACCGAGGGATAGAGAAAAgaataaagagaacagagacaggaacagagagcgagaggagaggaggaggaggtaaaACTCTTCCTTTCTCCCTCCTGAAGCAGCAGTGATGGACTGACATCTTTTTCTTCAGTTCTGTCATCCCTCGCTTCTTTACCTCATCCTGTCAACCTCTTTTGTTTTGGATTTgggacctgtctctctcttcaccTGTCTCTCTATGTCTACATCTGTCTGCCTGTATTTTCTAATAATGATTTTGTTGTTGATAAATGCGAGAGAAAAAACCCATTAAAGTTGCTTTAGATGTTTTctaatctgtttctgtttcaACTGTTTTCAGCTCCCTAACAAGATTTGATTTGACTGTGCAGTCACAGTGTGCTGTCTGACCAGAACATCTatcttttaaaatgttgcaATTATCATCAGTATTgatgttattgtatttttttaataacattttataaGTTCTTCAAAGATGCAATCTATTAATGCAAAGAGAGGCTTAATTTCCATATCACGGTGATACATTtataacatgtatttattactgcAGTTTGTAAAATtcaaatgtgaatgtttttttacGTTTTAACTAATCATGATCATAATATGAAGCCAAACTGTTTTGATCATAATGCAGCCGATGTGTGAAATGTTCTTTATATTCTGAGCTGATTGCTGCAGTCTTCTTCAAAGAGCAGACTGAGGGTGAGTGAAACGTAGCTCTTCCTCCCGCAGCTCTGATTGGTTCAGTGTCGACCTCAGTGATACAAAGATCATCTATTGGCTGGAATAAAC
>XM_039817457.1
ttttgaaatccgGAAGCTATCCGTGACCTGGAagtattcaattttattgtaGGAAGTTTCCGCCAGAAGAACGAAATCTTAACAGAGGGGCGAAAAGGCGGAAAATAAAAACGTATGGATTCTCCAGGCAGAAGTCGAAGTCCCAGTCCTAGGCAAAAAGAACAAAGTGGACCTACAGAAGACGAGTCCTGTGCTGCAGCAGAAAAGCCCCAACAGGCCGGCTCAGTTGAGGGAAGCCCCAAAGAGAGGCCATCTCCTCAGGCCAGTCCTGCAGGCCGTTCCCCCTCTGGGAGCCCTGCCTCCAGCAGCTCTGATGACAGCAGCAGtagtgatgatgaggatgaacATAACGGGGCACTGAGGAAGTTAAGGAGCAGTGTGGCTCAGATCAAAAGATCAAGATCCAAGTCCATGTCCAGAGAGCGAGACAGATCCATATCCAGAGAGCGAGACAGGTCCAGGTCCAGAGAGCGAGACAGGTCCAGGTCCAGAGAGCGAGACAGGTCCAGGTCCAGAGAGCGAGACAGGTCCACATCCCGATCCAGGTCCAGAGGGCGAGACAGGTCCAggtccagagagagagaccgagatcGGGGCCGCTACGACAGAGGACGCTATACTCGTGATCGCTATGACGATCGCCGTGACGACAGGGACGGGCGTTTTGACCGGTGGACGAATCGGGATTCAGAGTTTGATCACAGGAGGAGAGGACGCTCAGGCTCCCTTCCAACAGACAGGGAGCCAGCGGCGGCTGAAGAGCCGCCGgtcaagaagaagaaagaggaggtcGACCCAATCCTGACGAGGACGGGTGGAGCTTACATCCCCCCCGCCAAGCTGCGCATGATGCAACAGCAAATCACTGACAAGACCAGCCTGGCCTATCAGAGGATGAGCTGGGAGGCCCTGAAGAAGTCCATCAACGGTCTGATCAACAAAGTCAACGTGTCGAACATCGTCCACATCATCCAGGAGCTGCTGCAGGAGAACATCATCAGGGGAAGGGGTCTTCTGGCTCGCTCAGTGCTGCAGGCTCAGGCAGCATCTCCGACCTTTACTCACGTTTACTCCGCTGTTGTCGCCATCATCAACTCCAAGTTCCCTCAGATTGGAGAGCTGATCCTCAAACGCCTCATCCTGTCCTTCAGGAGGAGCTACCGCCGCAACCTcaagCAACAGTGCCTGACAGCCTCAAAGTTTGTGGCACATCTCATCAACCAGAACGTGGCCCATGAGGTTTTGTGTCTGGAGATGCTCACTCTGCTGCTGGAGCGTCCAACTGACGACAGCGTGGAGGTCTCCATCGCCTTCCTGAAGGAGTGTGGGCTCAAACTGACCGAGGTGTCCCCGCGAGGAATCAACGcCATATTTGAGCGTCTCAGGAATGTCCTCCACGAGTCGGCCATTGATAAGAGGGTCCAGTACATGATCGAGGTGATGTTTGCCATCAGGAAGGACGGTTTTAAAGATCATCCGGTGATCCCAGAGGGCCTGGACCTGGTGGACGAGGAAGACCAGTTCACCCACATGCTGCCGCTGGACGACGAGTACAATGTCGAGGAAATGCTCaATGTGTTTAAGATGGACCCAGACTTCCTGGATAACGAGGAGAAATACAAAACCATCAAAAGAGATATCCTGGACGAGGGCAGTAGCGATTCAGGGGAGGAGGGCGACGGCAgcgaagaagatgatgaagaggaagaagagaacgTGCAGGAGGGAGAAGATGAGAAGGTCACCATCTTTGATCAGACAGAAGTCAACCTGGTTGCTTTCAGAAGAACCATCTACCTTGCTATCCAgtccagTTTGGACTATGAGGAGTGCGCTCACAAACTGATCAAGATGGACTTTCCTGACAGCCAGACGAAGGAGCTATGTAACATGATCCTGGACTGCTGCGCTCAACAGAGAACATACGAGAAGTTCTTTGGTTTGCTGGCCGggaggtTCTGTCTGCTGAAGAAAGAGTACATGGAGAGTTTTGAGGGGATTTTTGCGGAGCAGTACGAAACGATTCACCGACTGGAGACCAACAAACTGAGGAACGTGGCTCGACTGTTCGCTCACCTGCTCTACACAGACTCTGTGCCCTGGAGTGTGTTGGAGTGCGTCAGGATGAGTGAGGAGACCACGACGTCGTCCAGCAGAATCTTTGTGAAGATCCTCTTCCAGGAGCTCTGTGCCTACATGGGCCTCCCCAGACTCAACCAGAGGCTCAAAGACATGACTCTGCAGCCGTTCTTTGAAGGTCTTTTTCCTCGTGATAATCCCAGAAACACTCGCTTCGCCATCAACTTCTTCACTTCTATTGGACTGGGAGGACTGACggacGAGTTAAGGGAACATTTGAAGAACGCTCCCAAGATGATCATGACTCAGAACCAGGAAGTGGAATCCTCTGACTCCTCGTCCTCTTCATCCTCGtcatcctcttcatcctcctctgaCTCATCCAGCGAATCAGATTCCTCCTCCTCAGACTCCTCCAGCGAATCAGATTCCTCCTCCTCAGACTCCTCCAGCAGCTCAGACGGAAAACgcaggaaaaagaagaagagtaaAGAACAAAacgaggagaaaaagaagaagaaagggaaAGACAAGAATCGAGCCGTACGAAAGAATCGAGCCGTACGCAAGAACgacgaggaggaggatgacagtgatgatgaaaaaCAGGCGAGGAAGGACAGGAAGGGCCGCACCCGTGAAGTGGATGGGCGTGAGCGCGCACGTGAAGTGGATGGGCGTGAGCGCGCACGTGAAGGCAGCCGCCGTAGCAGACGAGATGaaagagcagaagaagaagaggagcagcaggCGGAGGAGAGGAGACGAAAAACGGATGTTCAAGGCCGACAAAGAgacggagagagggagagagagagagacagcgggagggagagagagagagagcgagtgagggagagagagactgaggagaagagagagagggaaagggagCAAGAGAAACCGAGGGATAGAGAAAAgaataaagagaacagagacaggaacagagagcgagaggagaggaggaggaggtaaaACTCTTCCTTTCTCCCTCCTGAAGCAGCAGTGATGGACTGACATCTTTTTCTTCAGTTCTGTCATCCCTCGCTTCTTTACCTCATCCTGTCAACCTCTTTTGTTTTGGATTTgggacctgtctctctcttcaccTGTCTCTCTATGTCTACATCTGTCTGCCTGTATTTTCTAATAATGATTTTGTTGTTGATAAATGCGAGAGAAAAAACCCATTAAAGTTGCTTTAGATGTTTTctaa

Function

symbol description
cwc22 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome; U2-type catalytic step 2 spliceosome; and U2-type precatalytic spliceosome. Orthologous to human CWC22 (CWC22 spliceosome associated protein homolog).

NR:

description
PREDICTED: pre-mRNA-splicing factor CWC22 homolog

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13100 CWC22; pre-mRNA-splicing factor CWC22

RNA

RNA id representative length rna type GC content exon number start site end site
TU170433 False 1009 lncRNA 0.41 2 24198787 24199835
XM_039817457.1 True 3295 mRNA 0.52 21 24183949 24199308

Neighbor

gene id symbol gene type direction distance location
LOC120569575 ssfa2 coding upstream 4728 24153076 ~ 24179221 (+)
LOC120569576 NA coding upstream 31176 24138127 ~ 24152773 (+)
itga4 itga4 coding upstream 94521 24067270 ~ 24089428 (+)
usp9 usp9x,LOC104960511,LOC100693451 coding upstream 155179 23979737 ~ 24028770 (+)
ppp2r3b ppp2r3b,LOC100705877,LOC102783484,LOC107099188,LOC102198241 coding upstream 254540 23905136 ~ 23929409 (+)
znf385b znf385b,LOC102780200 coding downstream 6824 24206659 ~ 24255994 (+)
LOC120569821 NA coding downstream 62352 24262187 ~ 24274142 (+)
plekhm3 plekhm3 coding downstream 111072 24310907 ~ 24345969 (+)
fhip1b fam160a2 coding downstream 478662 24678497 ~ 24706412 (+)
LOC120570682 NA coding downstream 667486 24867321 ~ 24867439 (+)
G126675 NA non-coding upstream 1747 24180450 ~ 24182202 (+)
G126628 NA non-coding upstream 85111 24092070 ~ 24098838 (+)
LOC120570646 NA non-coding upstream 144454 24034876 ~ 24039495 (+)
G126582 rpl8,LOC106586796,LOC107673716,LOC106581950 non-coding upstream 149775 24030045 ~ 24034174 (+)
G126581 NA non-coding upstream 178307 24005073 ~ 24005642 (+)
G126712 NA non-coding downstream 180524 24380359 ~ 24383546 (+)
G126744 NA non-coding downstream 255902 24455737 ~ 24456127 (+)
G126802 NA non-coding downstream 645141 24844976 ~ 24859362 (+)
LOC120570481 LOC106579430,LOC106609078,LOC107088658 non-coding downstream 649563 24849398 ~ 24852960 (+)
G126807 NA non-coding downstream 682259 24882094 ~ 24883308 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 1083866 22978602 ~ 23100083 (+)
G126363 lmo7 other upstream 1368847 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 1445296 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 2492145 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 2549192 21619348 ~ 21634757 (+)
sestd1 sestd1 other downstream 77322 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 172636 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 1430272 25630107 ~ 25664427 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 1917153 26116988 ~ 26129879 (+)
mphosph8 mphosph8 other downstream 2211642 26411477 ~ 26439285 (+)

Expression


Co-expression Network