sestd1 (sestd1)


Basic Information

Item Value
gene id sestd1
gene name sestd1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24277157 ~ 24298218 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU170500
TCACAGCTTACCCTTCTTTAAAAGAGGATACAAATGTTAAATGTGATTCTTTCACAACGTTCAGCAGGAACTGTGAGAAcgactgtctgtctgctctacAACAGCGCCCTCTAACTGTTTTGCTGCCGTTAAATGATCCAGACGATTTCATAAATGTAAAATACTGGTATTAAATAATATTCATATCTCTGGATACTCGGTTTAAGATCAACTGTAAAATAAGTTTGGATAAGAATACTTATAATGTACAGCTAACACCACATCCTCTTTCCCTGCATGCCTCTTGTTTACCTAAGTGGGTGGAGCTTCCATGGTGCTAACACGGTGACCAAGGTTTTTGTCTGTGCCTCCTCCGACTTCTCGCCTTTCTTGCTTCCTTGccttcttttatttccctcctaACAGAAGATGAACTTCATGGCCTGTACAGGAAGGGCGGAGCTACTGTATATCAGGTGTGCTGCCACCTGATAGTATTTCTGCACCAACAGTCCTCTACATTTCTCCCATAGACTGTTGGGAGCTTTTCAACTCTGGGGTGGACATAAAACTCTCCTGGTTGCATCAGTATAGAGGAGAGAAGTCAACTACAAGTCCCAAAGAGCATCGCGAAACAAGAAACCTCATCCTATCAGCATCAAGTAAAAGATTTACATAATTAGTGAAATCCTTTTTGCAAGTCATCTGGGGAAATTCCCACGTTCAGTCTTCCTTCAAAGTCTAACTTAAAGTTAAATTCTCCTAAATTTCTGTGTAAGATATCCACCTTATAAAGTAAACATGGTGATGTGATCATACCTCTGCCCTCTACTACTGAGGGATGAGGATGACCTAAGGAAGTGGCCTCGGAACACACAAACTGCAAACTATGTAATATGTAATTCAGTGCACAAATTATTTTCTACCGGGTTCTCTATCTTTGCAATTACAGATTTGACCCAGAAATACTCAAGTGGAAACACAGAACTAGTAGAGAAATTGATTTgtagcaaaaaataataatttcagtTCGACTGATTGGATGTTTCCTGGTAAAATAGTTTTGGGACTTGTAGTCAACACAGTTCTAACATTGAAGCTTAACATCTTTCAAAGATCCAGAGGCTCCGACCACTTGGCTGCTCTAAATAAACCCTCTGCCTTCATGATGGAAATCAATTCAGTGTACAAACTGGGAGCACTGGTAGTCATTTGCCACATCAGAATAGGACAAATTCATTTTTCTACTTACCGTAATTGACTTTTTTCAAGCAAACCTTGCTATAATGGGTTGGTATTTTTGACCAATACGTGCTGCTGTAAGTGTATCGGCTAAATACTGTCTTGCTTTCTGTCCTCTTCGTCcaataatatatacacatgaCATCAGTATGACATCATCCTCTAAATAAAGAAGC
>XM_039817939.1
TGAGGCTGCGCAGAGCAGTGAGCTCCACCGCCTGCTTtctgtgttttcactgttgttcAAAGCTAACGGAGAGCAAACTAAGATCTTCAGTGTTTAACGGGAGCTAGATCAAATATCTGCGGATAAATCAACTTGTGAGGAGGaataggaggaggagaagaagaggaatagctgcagagctaaaagagagacaagggaggagaagaggaggaggatagggagaaaaaaaatcaaggacagtaacgttaacgttataatGCTGCAGATTTGACTGAAAGATGTCCAACGTTACCGTGGAAGCGACCAACATGCTCCCCATCCTCAAGAAGAAACTGGCCTTTCTTTCAgGGGGCAAAGACCGGCGCAGTGGTCTGATCCTGACCATCCCTCTCAGTTCAGATCAGACCAGCATGGAGGAGCTCAGCGCCACACTGGATTACCTGCTCAGCATCCCCAGtgaaAAGTGTAAGGCTCGGGGTTTCACAGTTATTGTGGACGGGCGGAAGTCTCAGTGGAACATCGTGAAGACTGTGGTGCTCATGTTGCAGAATGTGATTCCAGCTGAGGTGTCGCTGGTCTGCGTGGTAAAGCCAGATGAATTCTGGGATAAGAAGGTCACACACTTCTGTTTCTGGAAGGAGAAAGACCGCCTGGGCTTCGAGGTGATCCTGGTTTCGGCCAATAAGTTGACTCGTTACATTGAACCCTGTCAGCTGACGGACGATTTTGGAGGAAGTCTGGACTATGACCACAATGACTGGCTCAACAAGAGACTGGTTTTTGAGAAGTTCACCAAGGAGTCGACGTCACTGCTGGACGAGCTGTCCATTATCAACGACAGTGACAAGAACAGTGCAATGGACAAGGAGAAATCAGCTGACTGCGCCCTCTTGCCATCCTTTGACCCCGAGACTGTCCTTCAGACCGgtcaTGAGCTGCTGTCGGAGCTGCAGCAGCGTCGTTTTAACGGCtcggagggaggaggaggaggacagggagGTCCAGCCTGGTGTCCCATGGAGGAGGAGCTGCTGGCTCAGCCTCAGGTGATGAAGCTGCTGGACTCGCTCAGAGAGCAGTACACCAGATACCAGGAGCTCTGCAGGCAGCGAAACAAACGCACCCAGCTGGATGAGATCCATGCCAAGGTCATGCAGGTGGTCACCTGGCTGCAGGGTCCAGGTTCCGAGCTATTGAAGACTCAGCAGGCGATCGGAGACTCGATGCGAGCCGCTCAGGCCCTGCAGCAGAAACATGAGGAGATCGAGAGCCAGCACAGTGAGTGGTTTGCGGTGTATGTGGAGTTGAACCAGCAGATCGCTGCCTTGCTCAGTGccggggaggaggaagaggtggTGGAGCTAAAGGCGCTGCAGCAGCAATTGAGTGATGTCTGCTACCAACAGGCAGCTCAGCTGGAGGGCCGACAGAATGTCCTGCAGGCGGCGCAGGGCTTCCACAGCACCACACAGGagTTGTCCCAGCTGTTGGACGGTCTACTGGGCATGCTCTGTGCTGACGTAGCTCCAGCTGACGGAGCTTCGATTCAACAAAACCTCAAACTGTTGGAGGAGAAGCTGCAGACTGTCGAGGCAGGTCTTGCTTCTCTGCGTCAGAAGGGTGCGCTGTTGATGGAGCAGATGTGCACCCAGCCGTCATGGCCTCTGGAGGAAACGGAGAGTCCACCTGGAGAACAGCAGGACAACGTTCAGCACATCCAGGCTGTGATGGAGGAGATGCAGCTCCGCAAGCAGAGgtgtGAGGACATGGTAGATGTGAGGAGGCTGAAGATGCTACAGATGGTCCAACTGTTCAAATGTGAAGAAGACGCTTTACAGgcagTAGAGTGGCTTGGCGAGCTGTTGGACGCCCTTTTGAAGACTCATGTCAGACTGGGTGACGACTCTCAGGAGACCAGGACCATGTTGGACAAACACAGAAAGTTTGTGGACGTCGCTCAGAGCACCTATGATTATGGCCGTCAGCTGCTGCAGGCGACCGTTGTCCTCTGTCAGTCTCTGCGCTGTACGACGCGCTCGTCCGGAGACACTCTGCCACGACTCAACCGAGTCTGGAAACAGTTCAGCGTCAGCGCTgaggagagacaacagagaCTGGAGCTGGCTCTGAACTTTCACACCGCAGCCGAGAGGGTGTTACAGCAGGAATGTGTGGACCCAGAGTCTCTGGATGAAGTCGACTCTTCAGGGAAACCTCTGCTGGACAGGCTGACCATGCCTGTTATCTTCCCTGATgggACCGAGCAGTTCTTTGGGAGTCCGAGTGACACAGCGGCGGCAGCGGAGGGCGTCAGGGAGCGCCTCCTGCTGGTGGAGGAGCGACggctgcagctgcaggagaTGAGGCTTCATAatgacgaggaggaggaggaggaggaggaggtgcgTTCGGGGCAGGAGACACGGCTTGATGTGATCGGAGAGGAACTGAGCGAGAAAGAGGATcaagatgaggaggaagaggaggcgggGCAGCAGGATGAAGACTTAGAGAGGGCGACGCAGGACTGCTAATGGATCGCTGATTACGTTAAACTGAGCAGCATTACGGAAGTATCGTTAACGAAGGGCTGCGGATTCATTTTCACCGAAACCTCCAAGTGGTTGCTTCTGTCTCCCtgcagcagcctgcagcagtaGGTCTTACTGCTGtgctggtctttttttttttttcattaagacTACTTCTTCCACCAGCCTCACAGCTTACCCTTCTTTAAAAGAGGATACAAATGTTAAATGTGATTCTTTCACAACGTTCAGCAGGAACTGTGAGAAcgactgtctgtctgctctacAACAGCGCCCTCTAACTGTTTTGCTGCCGTTAAATGATCCAGACGATTTCATAAATGTAAAATACTGGTATTAAATAATATTCATATCTCTGGATACTCGGTTTAAGATCAACTGTAAAATAAGTTTGGATAAGAATACTTATAATGTACAGCTAACACCACATCCTCTTTCCCTGCATGCCTCTTGTTTACCTAAGTGGGTGGAGCTTCCATGGTGCTAACACGGTGACCAAGGTTTTTGTCTGTGCCTCCTCCGACTTCTCGCCTTTCTTGCTTCCTTGccttcttttatttccctcctaACAGAAGATGAACTTCATGGCCTGTACAGGAAGGGCGGAGCTACTGTATATCAGGTGTGCTGCCACCTGATAGTATTTCTGCACCAACAGTCCTCTACATTTCTCCCATAGACTGTTGGGAGCTTTTCAACTCTGGGGTGGACATAAAACTCTCCTGGTTGCATCAGTATAGAGGAGAGAAGTCAACTACAAGTCCCAAAGAGCATCGCGAAACAAGAAACCTCATCCTATCAGCATCAAGTAAAAGATTTACATAATTAGTGAAATCCTTTTTGCAAGTCATCTGGGGAAATTCCCACGTTCAGTCTTCCTTCAAAGTCTAACTTAAAGTTAAATTCTCCTAAATTTCTGTGTAAGATATCCACCTTATAAAGTAAACATGGTGATGTGATCATACCTCTGCCCTCTACTACTGAGGGATGAGGATGACCTAAGGAAGTGGCCTCGGAACACACAAACTGCAAACTATGTAATATGTAATTCAGTGCACAAATTATTTTCTACCGGGTTCTCTATCTTTGCAATTACAGATTTGACCCAGAAATACTCAAGTGGAAACACAGAACTAGTAGAGAAATTGATTTgtagcaaaaaataataatttcagtTCGACTGATTGGATGTTTCCTGGTAAAATAGTTTTGGGACTTGTAGTCAACACAGTTCTAACATTGAAGCTTAACATCTTTCAAAGATCCAGAGGCTCCGACCACTTGGCTGCTCTAAATAAACCCTCTGCCTTCATGATGGAAATCAATTCAGTGTACAAACTGGGAGCACTGGTAGTCATTTGCCACATCAGAATAGGACAAATTCATTTTTCTACTTACCGTAATTGACTTTTTTCAAGCAAACCTTGCTATAATGGGTTGGTATTTTTGACCAATACGTGCTGCTGTAAGTGTATCGGCTAAATACTGTCTTGCTTTCTGTCCTCTTCGTCcaataatatatacacatgaCATCAGTATGACATCATCCTCTAAATAAAGAAGCGTTTTGAAGTTGC

Function

symbol description
sestd1 Acts upstream of or within blood vessel morphogenesis. Is expressed in axial chorda mesoderm; myotome; notochord; retinal inner nuclear layer; and somite. Orthologous to human SESTD1 (SEC14 and spectrin domain containing 1).

NR:

description
PREDICTED: SEC14 domain and spectrin repeat-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170500 False 1397 lncRNA 0.40 1 24296809 24298205
XM_039817939.1 True 4129 mRNA 0.49 19 24277157 24298218

Neighbor

gene id symbol gene type direction distance location
LOC120569821 NA coding upstream 3015 24262187 ~ 24274142 (+)
znf385b znf385b,LOC102780200 coding upstream 21163 24206659 ~ 24255994 (+)
LOC120569575 ssfa2 coding upstream 97936 24153076 ~ 24179221 (+)
LOC120569576 NA coding upstream 124384 24138127 ~ 24152773 (+)
itga4 itga4 coding upstream 187729 24067270 ~ 24089428 (+)
plekhm3 plekhm3 coding downstream 12689 24310907 ~ 24345969 (+)
fhip1b fam160a2 coding downstream 380279 24678497 ~ 24706412 (+)
LOC120570682 NA coding downstream 569103 24867321 ~ 24867439 (+)
dhrs12 dhrs12,LOC102790591 coding downstream 569594 24867812 ~ 24880693 (+)
ints6 ints6 coding downstream 612867 24911085 ~ 24935004 (+)
G126675 NA non-coding upstream 94955 24180450 ~ 24182202 (+)
G126628 NA non-coding upstream 178319 24092070 ~ 24098838 (+)
LOC120570646 NA non-coding upstream 237662 24034876 ~ 24039495 (+)
G126582 rpl8,LOC106586796,LOC107673716,LOC106581950 non-coding upstream 242983 24030045 ~ 24034174 (+)
G126581 NA non-coding upstream 271515 24005073 ~ 24005642 (+)
G126712 NA non-coding downstream 82141 24380359 ~ 24383546 (+)
G126744 NA non-coding downstream 157519 24455737 ~ 24456127 (+)
G126802 NA non-coding downstream 546758 24844976 ~ 24859362 (+)
LOC120570481 LOC106579430,LOC106609078,LOC107088658 non-coding downstream 551180 24849398 ~ 24852960 (+)
G126807 NA non-coding downstream 583876 24882094 ~ 24883308 (+)
cwc22 cwc22 other upstream 77322 24183949 ~ 24199835 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 1177074 22978602 ~ 23100083 (+)
G126363 lmo7 other upstream 1462055 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 1538504 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 2585353 21655126 ~ 21691804 (+)
fzd5 LOC104950716,LOC108238837 other downstream 74253 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 1331889 25630107 ~ 25664427 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 1818770 26116988 ~ 26129879 (+)
mphosph8 mphosph8 other downstream 2113259 26411477 ~ 26439285 (+)
zmym2 zmym2 other downstream 2151225 26449443 ~ 26484088 (+)

Expression


Co-expression Network