cacnb4a (cacnb4)


Basic Information

Item Value
gene id cacnb4a
gene name cacnb4
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 25630107 ~ 25664427 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU170822
TGTGATAGGAGTGGAGGGGGAGGGTTAGTATCAGTGGTCGCACTGATACACGGGCTTCATCTATTCTGTGCAGACCTACTGCAGAGTGGGACGCATATTTTTCTCTTCTGTTGTTGTGAAGCGGAACCGGAGCCAAGCTGGAGCCCGCGGTCCACTGCCCACTACCGGAGCAGCAGCAGTTCCAGTGGAGCGGCACGGAGAGGCAGCCTCCGCCTTGGACCGATGAACTGGCTGAGATGTCCCGTCACATCTACACCCGACACGGGATAGGAGAAGGGATGCAGAAGCCCGTGTTTcagGCTAACAGAGGGACGTACTCCAGACGTAGCCGGCTGAAAAGGTCCGACGGCAGCACCACTTCCACCAGCTTCATCCTCAGACAGGGCTCAGCTGATTCCTATACAAGCCGACCGTCTGACTCGGATGTGTccctggaggaggagaaggagggcgGCCGACAGGAGAGGGAGCAGCAGGCCACTGTCCAGCTCGAGAGGGCAAAGACTAAAGCAGTGGCATTTGCAGTGAGGACCAACGTCAGCTACTGTGGTGCTCTGGACGAGGATGTTCCTGTGGCCGGCACTGCCGTCTCCTTTGATGCCAAGGACTTCCTCCACATCAAAGAGAAGTACAACAATGACTGGTGGATCGGCCGCCTGGTGAAAGAAGGCTGTGACATCGGCTTCATCCCGAGCCCTCTGAAGCTGGAAAACATCCGACTCCAGCAGGAACAGAAGAGAGGACGCTTCCATGGTAAGTCCAGTGGGAATTCTTCCTCAAGTCTGGGAGAAATGGTGTCGGGCACATTCAAGCCAAACCCCAACTCTGCAGgaaaacagaaacaaaaagtgGCTGAGCACATCCCTCCGTATGACGTGGTTCCCTCCATGAGGCCGGG
>TU170823
TTGGAAGGCAGATGAAATACCAGGTCTGCTCTTCCTCTGGGGACAACCAGGCTGCCTTACAATAATGGGAACCAACGCTCGCTCGGCTCCGGGGCAATAATATCCAATTCAGCATCAGGCAAACACAGGGCTccaccttttttctttctttctttctatctgcCGCTCTGGTGTGGTCTGGTTGCTCTGTAGTTTGTGTGGTCTATGTGGAGGAAGAGACTGCTGGTGGGCTCTGTCACTCCCCAGTCCTCATCACCCATCCTCTCTGGAACAGGTTGATCGTTTACTGCTTCTGCCAATTTTGCACCGAATAGCTGCTTTCTGGAATTCCACTCCTCCATGTACGATAACTTGTACCTACATGGATTTGAAGACTCGGAGGCGGGCTCAGCTGATTCCTATACAAGCCGACCGTCTGACTCGGATGTGTccctggaggaggagaaggagggcgGCCGACAGGAGAGGGAGCAGCAGGCCACTGTCCAGCTCGAGAGGGCAAAGACTAAAGCAGTGGCATTTGCAGTGAGGACCAACGTCAGCTACTGTGGTGCTCTGGACGAGGATGTTCCTGTGGCCGGCACTGCCGTCTCCTTTGATGCCAAGGACTTCCTCCACATCAAAGAGAAGTACAACAATGACTGGTGGATCGGCCGCCTGGTGAAAGAAGGCTGTGACATCGGCTTCATCCCGAGCCCTCTGAAGCTGGAAAACATCCGACTCCAGCAGGAACAGAAGAGAGGACGCTTCCATGGCAGTAAGTCCAGTGGGAATTCTTCCTCAAGTCTGGGAGAAATGGTGTCGGGCACATTCAAGCCAAACCCCAACTCTGCAGgaaaacagaaacaaaaagtgGCTGAGCACATCCCTCCGTATGACGTGGTTCCCTCCATGAGGCCGGG
>XM_039818319.1
ATCAGTGGTCGCACTGATACACGGGCTTCATCTATTCTGTGCAGACCTACTGCAGAGTGGGACGCATATTTTTCTCTTCTGTTGTTGTGAAGCGGAACCGGAGCCAAGCTGGAGCCCGCGGTCCACTGCCCACTACCGGAGCAGCAGCAGTTCCAGTGGAGCGGCACGGAGAGGCAGCCTCCGCCTTGGACCGATGAACTGGCTGAGATGTCCCGTCACATCTACACCCGACACGGGATAGGAGAAGGGATGCAGAAGCCCGTGTTTcagGCTAACAGAGGGACGTACTCCAGACGTAGCCGGCTGAAAAGGTCCGACGGCAGCACCACTTCCACCAGCTTCATCCTCAGACAGGGCTCAGCTGATTCCTATACAAGCCGACCGTCTGACTCGGATGTGTccctggaggaggagaaggagggcgGCCGACAGGAGAGGGAGCAGCAGGCCACTGTCCAGCTCGAGAGGGCAAAGACTAAAGCAGTGGCATTTGCAGTGAGGACCAACGTCAGCTACTGTGGTGCTCTGGACGAGGATGTTCCTGTGGCCGGCACTGCCGTCTCCTTTGATGCCAAGGACTTCCTCCACATCAAAGAGAAGTACAACAATGACTGGTGGATCGGCCGCCTGGTGAAAGAAGGCTGTGACATCGGCTTCATCCCGAGCCCTCTGAAGCTGGAAAACATCCGACTCCAGCAGGAACAGAAGAGAGGACGCTTCCATGGCAGTAAGTCCAGTGGGAATTCTTCCTCAAGTCTGGGAGAAATGGTGTCGGGCACATTCAAGCCAAACCCCAACTCTGCAGgaaaacagaaacaaaaagtgGCTGAGCACATCCCTCCGTATGACGTGGTTCCCTCCATGAGGCCGGCATATCCAGTGACAGATATGATGCAGAAGGCTCTGTTTGACTTCCTGAAGCACAGGTTTGACGGGAGGATATCCATCACAAGGGTAACAGCTGACATATCGTTGGCCAAGAGGTCAGTACTAAACAACCCCAGTAAGAGGGCCATCATTGAGAGATCCAACACCCGCTCCAGCCTGGCGGAGGTTCAGAGTGAAATAGAAAGGATCTTTGAGCTGGCCAGGTCTCTACAGCTGGTAGTGTTGGATGCAGACACAATTAACCATCCAGCACAGCTCATCAAGACCTCATTAGCACCCATTATCGTCCATGTTAAAGTGTCCTCACCTAAGGTCCTCCAGCGGCTGATCAAATCAAGAGGGAAATCTCAAAGCAAACACTTGAATGTGCAGCTTGTTGCAGCGGAAAAACTAGCACAGTGTCCTTCTGAGATGTTTGATATTATTCTGGATGAGAACCAGCTGGAAGATGCGTGTGAACACCTGGCAGAGTACCTGGAGGCATACTGGCGTGCTACACACACTTCACTTAGCACGCCACTCAACCCCCTGCTGGGACGCAATCTGGGTTCCACTGCTCTCTCCCCGTATCCAGCTGCCATTCAGGCCCAAAGAAACCGCAACAGCAACCACACAACAACAGACCTTTCACCTGTTGAACGTCGCAGCCTGATGCCTGCCGATGAGAACTACCATAATGAACGGGCGCGGAAAAATCGCAACCGTCTGTCCTCTGGGTCACAGCACAGCCGGGACCACTCACCTCTGGTGGAGGAGGACTACCAGGACCCCTACCAGGATTCCTACAAGCCTCATCGTAACCGAGGATCCCCGGGAGGCTACAGCCATGACTCCAGGCACCGGCATTGAGCTGTGGCCTGCTGTGAACAAAGTGTAGGCCTGTCTTTCTCTAACCACTATGGACATAAGAGTTGAGGCAGCTTTGCTGTAAGATGATGAAACTACTACACTCATTTGGACTGTAACAACTTTGTGTCGATGTGTAGTACCTCATTTTCCCTTTGGCCTTGGCTGCTGCCATAGGAGCATTTGaacctaaaaaaaataagaatccTGCTCTTGCTTTGATGTGAACAAGGGAAGGGACCGGGAATGAAAGTAGCACAAGAGCAGAAAAGTTATGTTTCCAAGGGAAGGATAAAGCTGGACCTGATCTGAATATACTGCAAATGTGGCTTGTGAGTGAAGTACACTAGCAGGTGATAGTGTGCGACGTAGGCTCTTCTGGATCCTCCCCACCATCTCAGCTGTTACTGTAGCATGCGGACTGTAATTACTGGTTACTACCTGCCTCAAGCCAGTGCCGCACAGCACTAGAGGTGATGATTAGCACAGAACCTATTTGCACGCGTCCAGGAGCAGGTAGAAGAAGAGTATAATGCATCTTTAATGCTCCTTAAGTTTGTTTACCACTGTCTGCGATGTGAGTGTAGTAAATCCAGTGGAAGCCTGTTCCCAAATCCAGAgttttacatattttgttttgaagTGACATGGATGGTGTCGTGGTGTTCTCTTCAGGGTTCATACAGTAGCTCTCTGTGCCctatttttgttatttcttaatgtcatttttaacattaaccATATCgagacaaaaatataaaaatcatgCAGATACTAATTCACTTCAGAGCTCCAAACCTCAGGAATGAGAGGTCATTTAGACCTAGAAGTGTGCTGACAGATGTAGCGTTTATTTCCCATCTGATGGGAATTTGATTCTGAGTGTTATTTTGAATTGTTAAGAGATATTATGATTTAGTTGTTTcaaaaaagttattaatataAGGAATTAACACTTTCAGGACTAGGAGTCACTAGCATGGTCAAGCCAGCATGTTTTTTCATATGCCATGCGTTTATCAGCTCCTGTTGTCTGTCATGTATTTGGCAGGACATCATTTGGAATAGATCGAATAAAATTTTAGTGAGGGATTTATATTGAGGGCTTCCATGTGTAACAGTAAAAATAGTTGAAGGACAGAAGCATTAATTCATTTAAAGTAGATTCAGTAGATTCATTCCATTCCATTGATTTCTTCTTTTAAAGCCTTGCATACACCTTTCATCTGatcaaaacatgtatttttaaatgtttcctcCATCTAACTTTATTACTAAAGCTTTTATGAAAGAAAGTAACAATGGtattaagtaacattttaattgAGTAGCAATTCAACAGGCCACCATGTCCATATTTTCAGCTATAACGTTTTTTCAATGTATTCAATTTCAGTTTAATTAAAGACTCCTAATGAGTGAAAGCA

Function

symbol description
cacnb4 Contributes to high voltage-gated calcium channel activity. Involved in regulation of voltage-gated calcium channel activity. Located in plasma membrane and synapse. Part of voltage-gated calcium channel complex. Implicated in dilated cardiomyopathy; episodic ataxia; episodic ataxia type 5; and idiopathic generalized epilepsy 9.

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit beta-4 isoform X1

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04865 CACNB4; voltage-dependent calcium channel beta-4

RNA

RNA id representative length rna type GC content exon number start site end site
TU170822 False 898 TUCP 0.57 8 25630107 25658726
TU170823 False 902 TUCP 0.53 7 25639806 25658726
XM_039818319.1 True 3161 mRNA 0.47 15 25630136 25664427

Neighbor

gene id symbol gene type direction distance location
stam2 stam2 coding upstream 1503 25609762 ~ 25628604 (+)
sec22a sec22a coding upstream 128039 25487484 ~ 25502068 (+)
pdia5 pdia5 coding upstream 148165 25411102 ~ 25481942 (+)
slc49a4 dirc2 coding upstream 434852 25147091 ~ 25195255 (+)
slc15a2 LOC102778044 coding upstream 498967 25100606 ~ 25131140 (+)
arl5a arl5a,LOC100697458,LOC107389652,LOC102234233 coding downstream 1519 25665946 ~ 25676144 (+)
neb neb coding downstream 13252 25677679 ~ 25743753 (+)
pdcl3 pdcl3,LOC106586481,LOC106582251 coding downstream 113357 25777784 ~ 25781915 (+)
lonrf2 lonrf2,LOC100703468,LOC102778803,LOC102208940 coding downstream 140885 25805312 ~ 25822465 (+)
LOC120569244 map4k4,LOC107101754,LOC103370377,LOC100703199,LOC102310984,LOC101483446,LOC103134843,LOC106951384,LOC104918237,LOC106926661,LOC103391611,LOC107389642,LOC102194576,LOC102777943 coding downstream 170232 25834659 ~ 25948472 (+)
G126904 NA non-coding upstream 410431 25216958 ~ 25219676 (+)
LOC120569827 NA non-coding upstream 413597 25213266 ~ 25216510 (+)
G126807 NA non-coding upstream 746799 24882094 ~ 24883308 (+)
G126802 NA non-coding upstream 770745 24844976 ~ 24859362 (+)
LOC120570481 LOC106579430,LOC106609078,LOC107088658 non-coding upstream 777147 24849398 ~ 24852960 (+)
G127054 NA non-coding downstream 160845 25825272 ~ 25826290 (+)
LOC120570231 NA non-coding downstream 417462 26081889 ~ 26084505 (+)
G127095 NA non-coding downstream 433846 26098273 ~ 26098541 (+)
G127203 NA non-coding downstream 603458 26267885 ~ 26268101 (+)
G127204 NA non-coding downstream 628016 26292443 ~ 26292789 (+)
fzd5 LOC104950716,LOC108238837 other upstream 1235122 24372471 ~ 24394985 (+)
sestd1 sestd1 other upstream 1331889 24277157 ~ 24298218 (+)
cwc22 cwc22 other upstream 1430272 24183949 ~ 24199835 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 2530024 22978602 ~ 23100083 (+)
G126363 lmo7 other upstream 2815005 22807193 ~ 22815102 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 452561 26116988 ~ 26129879 (+)
mphosph8 mphosph8 other downstream 747050 26411477 ~ 26439285 (+)
zmym2 zmym2 other downstream 785016 26449443 ~ 26484088 (+)
LOC120569906 NA other downstream 1048923 26713350 ~ 26717397 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other downstream 2724216 28388643 ~ 28409839 (+)

Expression


Co-expression Network