otc (otc)


Basic Information

Item Value
gene id otc
gene name otc
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20809318 ~ 20813381 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817062.1
CTAGCTCTGGCTGCATGTAAAcccatatactgtctatgtgtaaACCCCGGGACAGGCAGTGAATGAAAGATAACTGAAGAAATATTCCCACAACATCACACTTTCATTGTGTTTTCCTTGAGCTGCAATGTCTTCTAAACTATTTTCTATAAACAACACCGTTTTCAAATGTTTGAAAACTCTCCAAGACCGCTCGGCTCGAGGGTTTAGCATTGGAGCTGCTTCCCTTGGCTCAGTAAATTTAAAGGGTCGCAGCTGTCTCACTCTGAAAGACTTCAGCTCAGATGAAATCAAGAGGCTGTTGTGGGTGTCAGGGGATCTAAAACTTCGGATCAAGCATGAAAAacagTATCTTCCTCTTCTGCAAGGAAAGTCGATTGCTATGATATTTGAGAAGAGGAGCACCCGAACAAGAATGTCCACAGAAACAGGTTTTGCTTTGCTGGGTGGGCACCCCTGTTTCCTCACCTCTCAGGACATCCACCTGGGAGTGAATGAGAGTGGCACAGACACAGCAAGGGTTCTCTCAGGACTCTGCGATATTGTCTTGGCACGAGTGTATAGCCATTCCACGCTGGAGGAGCTGGATAAGGAGGCCTCCATCCCCATCATTAACGGTCTGTCTGACCTCTACCACCCAATCCAGATTCTAGCAGACTTCCTCACCTTACAGGAGCATTATGGGTCCCTTAGTGGACTAACAGTGAGCTGGATTGGAGATGGAAACAACGTCCTCCACTCTTTCATGATGACTGCAGCTAAATTGGGAGTTCATCTTAAGATTGCTACACCAAAGGGCTATGAGCCAGAAAAGAGTGTTATACAAGAGGCACAAAGACTCTCCAAAGAGCATGGTACCCAGCTTGTTCTGACCTCTGACCCGATGGAGGCCGCCCACGGCAGCAATGTTTTGGTCACTGACACCTGGGTCAGCATGGgacaagaggaggagaagaaaaagaggctcAAAGACTTTAAAGGTTACCAGATTACATTGCAGACAGGAAGTGTGGCCAAACCAGACTGGACCTTCCTGCATTGTCTCCCCCGGAAAATGGAGGAGGTGGATGACCAGGTATTCTACTCACCCCACTCCCTCGTCTTCCCAGAGGCAGAGAACAGAAAGTGGACAATTATGGGTCTGATGGTGTCTCTTCTGACTGACTACACTCCACAGATCCCCATGCTCAAGTTTTAACTTCAGGTCATAAGGCGCAGTTTTACATGTGTGTCGTGACGTATGACAGTCTTACTGCAGGTTTCTCTGCATTGTTCAATTTCAAGTTCAATCATTGATAGCACTATCACAACACTAGATGGATTACccaaaaataattgtttacATTGTTTAATTCACGTTCTGATTTAGAGCATGGATGGCCTTGTTTTCCTTGTCTCACTGTTCACATTCTACATTTACTAATAGAGAGCGAGGATTGTGGCGAGCATGAGTTTTATAGTGTAAATGTCTTTGctactgaaaaggaaaaagattACTGAGCCTTTCTTCAACTTGTTTAATGTTGTCTTGACTTCACAACATTCTCAAAGATAATCGGAAACTTGAAGGAGAAAACGCAATTAGCCCGAGCTGACCAATTGCAATCCTTGCAGTCTCCACATGGTATTTACAGTACATAGCCGCTGTAACCACGACATGTAGTCACGTTTTTGAGGAAATGAACATCGGCTGCTGTGCCAAGCCCATTAAATGCATATTTATAAATCCGGATTTACTGCCAAaagccccttttttttttactgccacGCCACTGTTAGCCTATTTTGAACACGTCAAATATACAGAACTTTAAAGGACAGCAGACCATTTTGCAGAATATAGGCTACCACACAGTTTTACGTTTGAATCAGTGCAGTAAGAAAACTAATTTGTAAACAATTGAAACTGGCTTGTCAAAGGTAATGCATCATAGCAGTATGGATCACATGTAGTTAGGTTCGAATTGTATGGCATGGGCATCCTGGTGACTACAACAACTACGTTTTTTTACATATACCACTCTCTTCCAGTCATGTAATTTGTCTGTCTCTTCTGTATATCTAATAAAAGCCAAATGCTAAAAAATA

Function

symbol description
otc Predicted to enable ornithine carbamoyltransferase activity. Predicted to be involved in arginine biosynthetic process via ornithine and citrulline biosynthetic process. Predicted to act upstream of or within cellular amino acid metabolic process and urea cycle. Predicted to be active in mitochondrion. Is expressed in ball; brain; liver; and muscle. Human ortholog(s) of this gene implicated in ornithine carbamoyltransferase deficiency. Orthologous to human OTC (ornithine transcarbamylase).

NR:

description
ornithine carbamoyltransferase, mitochondrial

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016743 carboxyl- or carbamoyltransferase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00611 OTC, argF, argI; ornithine carbamoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817062.1 True 2088 mRNA 0.43 10 20809318 20813381

Neighbor

gene id symbol gene type direction distance location
sytl5 sytl5 coding upstream 34663 20738792 ~ 20774655 (+)
xk xk coding upstream 75033 20724860 ~ 20734285 (+)
asb11 LOC104950685,LOC102779537,LOC102313943 coding upstream 98618 20707241 ~ 20710700 (+)
piga piga coding upstream 103314 20699231 ~ 20706004 (+)
gabpa gabpa coding upstream 160152 20641212 ~ 20649166 (+)
gpr161a gpr161 coding downstream 106 20813487 ~ 20823161 (+)
cep97 cep97 coding downstream 52554 20865935 ~ 20871334 (+)
nxpe3 nxpe3 coding downstream 62011 20875392 ~ 20885262 (+)
pou2f1b pou2f1 coding downstream 124187 20937568 ~ 20953570 (+)
lamp1b LOC104951941 coding downstream 157915 20971296 ~ 20976876 (+)
G125718 NA non-coding upstream 96124 20712406 ~ 20713194 (+)
G125702 NA non-coding upstream 122271 20686697 ~ 20687047 (+)
LOC120570651 NA non-coding upstream 130242 20667680 ~ 20679076 (+)
G125675 LOC106940919,LOC102232862,LOC103459816 non-coding upstream 157449 20649273 ~ 20651869 (+)
G125668 NA non-coding upstream 197654 20603691 ~ 20611664 (+)
G125749 NA non-coding downstream 19113 20832494 ~ 20835754 (+)
LOC120570516 NA non-coding downstream 90613 20903994 ~ 20911358 (+)
G125826 NA non-coding downstream 140356 20953737 ~ 20958039 (+)
G125825 NA non-coding downstream 145326 20958707 ~ 20959962 (+)
G125892 NA non-coding downstream 377651 21191032 ~ 21191666 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 288044 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 543728 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 815994 19968360 ~ 19993324 (+)
igsf3 LOC103352919,LOC104967650 other upstream 1350044 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 1718533 19089418 ~ 19090785 (+)
mpc2b mpc2 other downstream 39708 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 46771 20860152 ~ 20865442 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 805967 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 841745 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 1917542 22730923 ~ 22738653 (+)

Expression


Co-expression Network